PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G12570.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 367aa    MW: 38227.4 Da    PI: 5.9477
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G12570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.8e-18180234256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OGLUM09G12570.1 180 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 234
                      788899***********************************************98 PP
2HD-ZIP_I/II127.17.8e-41180270192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  OGLUM09G12570.1 180 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 270
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-18165230IPR009057Homeodomain-like
SuperFamilySSF466892.05E-18168237IPR009057Homeodomain-like
PROSITE profilePS5007117.07176236IPR001356Homeobox domain
SMARTSM003891.1E-15178240IPR001356Homeobox domain
PfamPF000462.5E-15180234IPR001356Homeobox domain
CDDcd000869.14E-17180237No hitNo description
PROSITE patternPS000270211234IPR017970Homeobox, conserved site
PfamPF021831.4E-10236270IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24236279IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MELGLSLGEA MADAGRELVL GLGMGRREEA AEAGRRDHEV RRELEFGSMS SRCGGSSPEP  60
TVRLTLLPMV PGLGLPWPPP PPPSSESSEC GDGHLEASTR GFDVNRPPSS GGGGGGGAEE  120
EQDDAAGAAL SSSPNNSAGS FPMDDFSGHG LGGNDAAPGG GGGDRSCSRA SDEDDGGSAR  180
KKLRLSKEQS AFLEESFKEH STLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV  240
DCEYLKRCCE TLTEENRRLQ KELAELRALK TVHPFYMHLP ATTLSMCPSC ERVASNSAPA  300
TASSAATSST AAPPAAPSSG GIAATSSSSA AAAAAPDHRP SSFAALFSSP RGFPLSVAPQ  360
AQPPTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228236RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611029.10.0homeobox-leucine zipper protein HOX11
SwissprotQ67UE20.0HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A0E0B3M20.0A0A0E0B3M2_9ORYZ; Uncharacterized protein
STRINGOGLUM09G12570.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-62homeobox from Arabidopsis thaliana