PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G11780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 31334.3 Da PI: 5.2231 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdps+ r++lg++ taeeAa+a++a ++k++g OGLUM09G11780.1 24 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 73 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.46E-33 | 24 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.1E-33 | 24 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 24 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 24 | 82 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-36 | 24 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-12 | 25 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MLTTKLVQHD GPTARSAKRK RKNQYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTYNTAEEA 60 ARAYDAEARK IRGKKAKVNF PDEPAVAQKL SLKQNAAKQE KLAPPLKTCG DDAFFQLNSS 120 DNDLFAMLAK VPAKPAEPVD LMPPVKPLAS TETFEMNMLS DTSSNSFGSS DFGWEDDTLT 180 PDYTSVFVPN AAMPAYGEPA YLTGGAPKRM RNNYGIAVPQ GNGMPNLAQN MPTFDPEMKY 240 LPLPYVESSS DESMDNLLQN DATQDGASNE GIWSLDELLM AAGAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 23 | 81 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-20 | 24 | 81 | 5 | 63 | ATERF1 |
3gcc_A | 2e-20 | 24 | 81 | 5 | 63 | ATERF1 |
5wx9_A | 5e-20 | 23 | 83 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK104576 | 0.0 | AK104576.1 Oryza sativa Japonica Group cDNA clone:006-307-A07, full insert sequence. | |||
GenBank | AK104723 | 0.0 | AK104723.1 Oryza sativa Japonica Group cDNA clone:001-038-B05, full insert sequence. | |||
GenBank | AK111690 | 0.0 | AK111690.1 Oryza sativa Japonica Group cDNA clone:J023008G03, full insert sequence. | |||
GenBank | AP005551 | 0.0 | AP005551.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1081_G10. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY831392 | 0.0 | AY831392.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 1 (BIERF1) mRNA, complete cds. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
GenBank | DQ417199 | 0.0 | DQ417199.1 Oryza sativa (japonica cultivar-group) putative EREBP transcription factor (EREBP) mRNA, complete cds. | |||
GenBank | EU837256 | 0.0 | EU837256.1 Oryza sativa Japonica Group clone KCS059H07 EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611873.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0E0B3C8 | 0.0 | A0A0E0B3C8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0ESI4 | 0.0 | A0A0E0ESI4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G11780.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI09G12180.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11200 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 3e-28 | related to AP2 12 |