PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G10370.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 292aa    MW: 31514 Da    PI: 6.1261
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G10370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.63.1e-46231631128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk........kvkaeekew.yfFskrdkkyatgkrknratksgyWk 84 
                      lppGfrF+Ptd elv +yL++k+++  ++   +i+++d+y++ePwdL p         ++++ee+++ yfF++r+ + ++g+r+nrat++gyWk
  OGLUM09G10370.1  23 LPPGFRFRPTDGELVAHYLARKAADAGFTS-AAIRDADLYRAEPWDLlPPprcdaaaeEMEEEEERCgYFFCTRSFRWPSGTRTNRATAAGYWK 115
                      79*************************999.78**************622457777665555555558************************** PP

              NAM  85 atgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +tgkdk+vl+     +g+ vg+kktLvfy+grap+gekt+Wvmheyrl
  OGLUM09G10370.1 116 STGKDKAVLHGggggGGRPVGVKKTLVFYRGRAPRGEKTSWVMHEYRL 163
                      **********988877888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5214195IPR003441NAC domain
PROSITE profilePS5100551.23123195IPR003441NAC domain
PfamPF023653.6E-2724163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAGGGGGDRA PSSSSTAMIS RLLPPGFRFR PTDGELVAHY LARKAADAGF TSAAIRDADL  60
YRAEPWDLLP PPRCDAAAEE MEEEEERCGY FFCTRSFRWP SGTRTNRATA AGYWKSTGKD  120
KAVLHGGGGG GGRPVGVKKT LVFYRGRAPR GEKTSWVMHE YRLLHGGAAA TASSSPTPTT  180
VVARSEWVIC RVFVRKTPDG NNDRGTTEHH LPSDDAHLRS SPAPANSVDG AGHASCSFFS  240
GANESMAPSD HFNIGDDMIL HGHDEEELLM MNCSSAFDLP ELLDYESFSL DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-412319715170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641910.0AK064191.1 Oryza sativa Japonica Group cDNA clone:002-104-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611185.10.0NAC domain-containing protein 79
SwissprotQ9FLR34e-53NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A0E0B2V20.0A0A0E0B2V2_9ORYZ; Uncharacterized protein
STRINGOGLUM09G10370.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.17e-52NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]