PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G08880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 330aa MW: 35333.1 Da PI: 4.8107 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.4e-19 | 93 | 146 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq+++Le+ Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k OGLUM09G08880.1 93 KRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 146 4579*************98**********************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.9 | 3.1e-39 | 92 | 182 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE d+++L++a+d+l + +++L +++e+Lr+++ OGLUM09G08880.1 92 RKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQV 182 8*****************9999******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.556 | 87 | 148 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.88E-17 | 88 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-16 | 90 | 152 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.17E-16 | 92 | 149 | No hit | No description |
Pfam | PF00046 | 2.1E-16 | 93 | 146 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-19 | 97 | 147 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.6E-6 | 119 | 128 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.6E-6 | 128 | 144 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.1E-11 | 148 | 190 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MDDYSGRLVF SSAGAAPPCS AAGAGGGQML LFGGHGGFVG GSPVMEEAEL RRRRRKRPFL 60 TTTHDELELQ MEDLVDELYG VDEQGSSSAA ARKRRLTAEQ VRALERSFEE EKRKLEPERK 120 SELARRLGIA PRQVAVWFQN RRARWKTKQL ELDFDRLRAA HDELLAGRAA LAADNESLRS 180 QVILLTEKLQ ANGKSPSPSP APAEQTAVPA APESAKSFQL EEGRRLYDAA GSTTTTTNGG 240 GGGVAMPAAR VAAARAASND SPESYFAGAR SPPSSSDDDC GGGSDDDYPS SSVLLPVDAV 300 LAGDAFEHAV AATVAADEEA PLNSWEWFWN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 57 | LRRRRRKRP |
2 | 50 | 56 | RRRRRKR |
3 | 140 | 148 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837895 | 0.0 | CT837895.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112M06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610704.1 | 0.0 | homeobox-leucine zipper protein HOX25 | ||||
Swissprot | A3BYC1 | 1e-174 | HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25 | ||||
TrEMBL | A0A0E0B2C8 | 0.0 | A0A0E0B2C8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G08880.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12756 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-29 | homeobox 1 |