PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G03660.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 416aa    MW: 47841.9 Da    PI: 8.6467
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G03660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.42.2e-163575340
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE CS
             WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver 40
                     Dgy+WrKYGqK++ +++++rsYY+Ct +   gC+++k +  
  OGLUM09G03660.1 35 DGYEWRKYGQKSISKTKHSRSYYKCTNQkeqGCMATKTMSA 75
                     9*************************998889*****8765 PP
2WRKY604.6e-19196261359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 
                      Dgy+WrKYGqK++ +++++rsYYrCt +   gC+++k v++ ++d++      + ++ Y g+H+++
  OGLUM09G03660.1 196 DGYEWRKYGQKSISKTKHSRSYYRCTNQkgqGCMATKTVQQIENDNSsnsvvkLYNVDYFGKHTCK 261
                      9**************************99999*******999988751211114567799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-162075IPR003657WRKY domain
SuperFamilySSF1182901.83E-142775IPR003657WRKY domain
SMARTSM007741.5E-133387IPR003657WRKY domain
PROSITE profilePS5081114.2633571IPR003657WRKY domain
PfamPF031066.8E-153579IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-21180261IPR003657WRKY domain
SuperFamilySSF1182902.35E-19189262IPR003657WRKY domain
SMARTSM007741.3E-27194262IPR003657WRKY domain
PROSITE profilePS5081115.732196240IPR003657WRKY domain
PfamPF031061.1E-20196261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MNEVVNNGCI IGSFRACRKN VQHTCSVVTA TPDYDGYEWR KYGQKSISKT KHSRSYYKCT  60
NQKEQGCMAT KTMSANIESF CCIDHRMIIQ EMKREHGLLI DLKNHIIPIL RFNNVQADHI  120
VHAFDDILCC SNGIISKIQA EVCDGGNSDP GIDKGNGRNA LDNMKVFIED GTVTKNKRRK  180
NAQHTGSVVT ATPDYDGYEW RKYGQKSISK TKHSRSYYRC TNQKGQGCMA TKTVQQIEND  240
NSSNSVVKLY NVDYFGKHTC KFGNDMVCPD IVETDSPKYS SINDKYASTR LTNHSDDHQP  300
KNDMKPENLF AVPDMSLFSE NMWDIIFEDV TMNSTFSLEQ EAKDSWIKHQ QESTIHLVQY  360
RHSQHTRTHP YERMHANPTP MSIFEDCAGK YLRLTKSPQA PRYRRVRRLP LEAQRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-13187261269OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058290.0AP005829.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1008E06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611479.10.0disease resistance protein RRS1 isoform X1
TrEMBLA0A0E0B0I20.0A0A0E0B0I2_9ORYZ; Uncharacterized protein
STRINGOGLUM09G03660.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1931588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.21e-17WRKY family protein