PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G01090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 19334.1 Da PI: 4.546 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.8 | 2.5e-12 | 2 | 42 | 4 | 44 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 e++ r+v fskRr+ ++K A+ELSv +a+va ++fs+ g OGLUM09G01090.1 2 ESEEARKVCFSKRRADLFKMASELSVHFNADVAAVVFSPAG 42 78889**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.904 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.1E-4 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-14 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-17 | 2 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MESEEARKVC FSKRRADLFK MASELSVHFN ADVAAVVFSP AGNRAYSIGD PSVMDRFLSS 60 LPAPAPPAET EPEPEVDWSV MEELSRQCGQ LQAMVDAHKA RLEKAEEKLR ESGAAAWMMD 120 LEAEVGRMAP EDVLALVTKL AVLRDGVAER AHEMLREALL AVAAPTPTTP TTPLPAGF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005789 | 0.0 | AP005789.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0563F09. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611505.1 | 1e-123 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A0E0AZI8 | 1e-124 | A0A0E0AZI8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G01090.1 | 1e-125 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20261 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-13 | AGAMOUS-like 29 |