PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G00030.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 488aa    MW: 54224.3 Da    PI: 10.2737
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G00030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.88.2e-1080167397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      fqr ws +De+++L ++   ++++gk       +++  ++++++ k  + + l +K+r + ++  ++ k+         +++hd+  ++ls+ +
  OGLUM09G00030.1  80 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSRNV 165
                      9************************65..56789999999999865278899********9999998888......556899************ PP

           DUF573  96 Wg 97 
                      W 
  OGLUM09G00030.1 166 WV 167
                      *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-1380166IPR007592Protein of unknown function DUF573
PfamPF030171.8E-17391445IPR004264Transposase, Tnp1/En/Spm-like
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MAPTLPVVPA HGEDKKKKKK KKPSQEEEAL PLPLPLPPPD RKRKKASEPV NSPERAKKKK  60
KTATPHEPPS AKQQKRPLPF QRTWSPNDEV LILEAMAAHR QEHGKVPTAA ELFPVLNGRL  120
DRKRLTYKKL ADKLRTFMRR HGRDAKNGPP TQAHDRRLYD LSRNVWVSQT QPPNLSANAN  180
SNIAGGQPNQ HDAMSTAGKA FVKMRDSYPN LTQALLLLVG TDLEKALTAI DETKAQALDL  240
KVSNLKKELS EAVMESATIQ STESSKIPCF PSTKLQPEFG AEIEKNFQLE HLDEMKGAQS  300
QQMVDSKQQQ DKSSAKGIIC ESSESGIRSI VADNNILCNT LQKEMVVQQK LSCGKTKEVT  360
SKHRHPQKLG ELRRVTMHGQ KEDTNNEGGK EVLLLSTTRP HIPVAKATLQ TSSGSKFVGG  420
MPLGSEWYQV FVNDVLKPEA PLLRPPGMKM AEALKSIIAW PCAQVTDKAD FMSETKLYRF  480
AHYKGCGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11322DKKKKKKKKP
21521KKKKKKK
34044RKRKK
44260RKKASEPVNSPERAKKKKK
55359ERAKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723860.0AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610933.10.0uncharacterized protein LOC4346364 isoform X1
TrEMBLA0A0E0AZ590.0A0A0E0AZ59_9ORYZ; Uncharacterized protein
STRINGOGLUM09G00030.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139691113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-11DNA-binding storekeeper protein-related transcriptional regulator