PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G22840.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 297aa MW: 33200.1 Da PI: 9.7763 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84 | 9.3e-27 | 128 | 177 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s OGLUM08G22840.2 128 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 177 8***********************************************86 PP | |||||||
2 | K-box | 15.7 | 6.1e-07 | 242 | 284 | 43 | 85 |
K-box 43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +++L++ eL+ Le+++ ++l+ +++k + + + + ++ kk k OGLUM08G22840.2 242 VNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEKKRK 284 799********************99988777777776666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-34 | 119 | 178 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.73 | 119 | 179 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-27 | 121 | 141 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-28 | 121 | 202 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.42E-31 | 124 | 189 | No hit | No description |
Pfam | PF00319 | 6.8E-26 | 128 | 175 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-27 | 141 | 156 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-27 | 156 | 177 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MVQLQDLSLS SIISCIKIHS AIIRPLSEEM GAGTMAPTGD SHDAIIPSET WILNSDETSR 60 RPRSPATLPP PVPTPLHGRA AAQQQQQQLA RRGDGEMEML GFVVDRWRSW GMEGGGRRRK 120 KGKVELRRIE DRTSRQVRFS KRRSGLFKKA YELSVLCDAQ VALLVFSPAG RLYEFASSTS 180 SIDTIFGRYW DLLDTTIDLN IEARESRLRQ KERSDDPVPK INHITQCCLI VQVIISVLES 240 NVNELNIAEL RGLEEAMTNA LTVVKNKLMM KVASVLPQSE KKRKSCSISE PRSGVSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 1e-15 | 121 | 189 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-15 | 121 | 189 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-15 | 121 | 189 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-15 | 121 | 189 | 2 | 68 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242980 | 1e-179 | AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649437.1 | 1e-119 | MADS-box transcription factor 51-like isoform X1 | ||||
TrEMBL | A0A0E0AY31 | 0.0 | A0A0E0AY31_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G22840.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-24 | MIKC_MADS family protein |