PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G21580.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 1140aa    MW: 124445 Da    PI: 7.6357
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G21580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.7e-40186263178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv++C+adl++ak+yhrrhkvCe+h k++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  OGLUM08G21580.1 186 MCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 263
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.1E-34179248IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.949184261IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-37185264IPR004333Transcription factor, SBP-box
PfamPF031102.5E-29187260IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1140 aa     Download sequence    Send to blast
MQREVGPQVA PPMFLHQIQP LPPHATAAKK RGNPWPAAAV AAAEAKGGGN WNPRMWDWDS  60
RALTAKPSSD ALRVNAGLSH HQQQQQQSPP AVAKAAEALR QGGGGSGGLN LQLGLREDAA  120
TPMDVSPAAT TVSSSPSPPA SSAPAQEPVV RPSKRVRSGS PGSASGGGGG GGGGGNSGGG  180
GGSYPMCQVD DCRADLTNAK DYHRRHKVCE IHGKTTKALV GNQMQRFCQQ CSRFHPLSEF  240
DEGKRSCRRR LAGHNRRRRK TQPTDVASQL LLPGNQENAA NRTQDIVNLI TVIARLQGSN  300
VGKLPSIPPI PDKDNLVQII SKINSINNGN SASKSPPSEA VDLNASHSQQ QDSVQRTTNG  360
FEKQTNGLDK QTNGFDKQAD GFDKQAVPST MDLLAVLSTA LATSNPDSNT SQSQGSSDSS  420
GNNKSKSQST EPANVVNSHE KSIRVFSATR KNDALERSPE MYKQPDQETP PYLSLRLFGS  480
TEEDVPCKMD TANKYLSSES SNPLDERSPS SSPPVTHKFF PIRSVDEDAR IADYGEDIAT  540
VEVSTSRAWR APPLELFKDS ERPIENGSPP NPAYQSCYTS TSCSDHSPST SNSDGQDRTG  600
RIIFKLFGKE PSTIPGNLRG EIVNWLKHSP NEMEGYIRPG CLVLSMYLSM PAIAWDELEE  660
NLLQRVNTLV QGSDLDFWRK GRFLVRTDAQ LVSYKDGATR LSKSWRTWNT PELTFVSPIA  720
VVGGRKTSLI LKGRNLTIPG TQIHCTSTGK YISKEVLCSA YPGTIYDDSG VETFDLPGEP  780
HLILGRYFIE VENRFRGNSF PVIIANSSVC QELRSLEGEL EGSQFVDGSS DDQAHDARRL  840
KPKDEVLHFL NELGWLFQKA AASTSAEKSD SSGLDLMYFS TARFRYLLLF SSERDWCSLT  900
KTLLEILAKR SLASDELSQE TLEMLSEIHL LNRAVKRKSS HMARLLVQFV VVCPDDSKLY  960
PFLPNVAGPG GLTPLHLAAS IEDAVDIVDA LTDDPQQIGL SCWHSALDDD GQSPETYAKL  1020
RNNNAYNELV AQKLVDRKNN QVTIMVGKEE IHMDQSGNVG EKNKSAIQAL QIRSCNQCAI  1080
LDAGLLRRPM HSRGLLARPY IHSMLAIAAV CVCVCVFMRA LLRFNSGRSF KWERLDFGTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-32175260184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164182SGGGGGGGGGGNSGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420700.0AK242070.1 Oryza sativa Japonica Group cDNA, clone: J075133L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649921.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A0E0AXL30.0A0A0E0AXL3_9ORYZ; Uncharacterized protein
STRINGOGLUM08G21580.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14