PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G21100.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 344aa    MW: 35159.8 Da    PI: 6.1087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G21100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00079243265123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F +   L  H+r+H
  OGLUM08G21100.1 243 HECSICGAEFASGQALGGHMRRH 265
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.8E-11134159IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-8134157No hitNo description
SMARTSM003550.24135157IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201135162IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-8238265No hitNo description
PfamPF139121.5E-12242266IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263243270IPR007087Zinc finger, C2H2
SMARTSM003550.016243265IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGVQEEAALA AAVVKGKRSK RQRAHAAAMV PIAASAATAE EESMESSLSL SGGAAAAEGS  60
STTSPLMTTA TTARGDEAVS GCVTEEEEDM ALCLMLLASG GHGERAPDAE AVAAKEAKFR  120
SRRPADGAGA GEFVYECKTC SKCFPSFQAL GGHRTSHKKP RLVALPATTE PAADDKVKPA  180
IPEAAAAAAE EKPPKPSPPR PPASRPIATD PTVLAIPVIP KQEVLDATNA AAIASVSKQP  240
RVHECSICGA EFASGQALGG HMRRHRPLIP ASASSAVVSV LDAVDAPRQK EKSLLELDLN  300
MPAPCDDAAA ETTTSSAATS PAFAFAVSDR SPLLVPAALV GCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8336970.0CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634434.11e-151zinc finger protein ZAT5
TrEMBLA0A0E0AXF20.0A0A0E0AXF2_9ORYZ; Uncharacterized protein
STRINGOGLUM08G21100.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-30C2H2 family protein