PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G19590.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 930aa    MW: 100193 Da    PI: 7.9636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G19590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001412434123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k++  +s +  Hi +H
  OGLUM08G19590.1 412 FECPVCNKTYEEQSRYFGHIGSH 434
                      89***************999777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.023237310IPR001739Methyl-CpG DNA binding
SuperFamilySSF541717.19E-7241292IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.104.9E-4242291IPR001739Methyl-CpG DNA binding
PfamPF014292.2E-5247290IPR001739Methyl-CpG DNA binding
SMARTSM003550.41363386IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280365386IPR007087Zinc finger, C2H2
SMARTSM003550.088412434IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85412439IPR007087Zinc finger, C2H2
PROSITE patternPS000280414434IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MQSPTPLFPS TLLALCPEFD AERRFRPGRH LSATSLTWSA ASINMSSSSS PLHPSLSLSS  60
PSSSSLLRDK AAHRPPTAPD SLSGITLYMA LIDRAVFNES AGSRKQTFSR VRFGAAAAVA  120
ASPSSPSPAA AAKLPRGNDK EDSFIAYHLR RLFAPDDPSS PQTQTLALPA PPSPDPDQLT  180
TNSKGVSVDL VSLSRLADPY DAELGKRTAG MTTEEELMGF ISSLAGQWVS QRMRRKLVDA  240
SFFGDHLPSG WRLQLGIKRK DRKAWVNCFS YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT  300
DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT SMDSQSNFPV ASATFYSHSR DQDETVADDI  360
NSYECQQCNL TFHGQSAYAH HLITFHKVSS KRRKSNKVSK FGEPVIGKDG KFECPVCNKT  420
YEEQSRYFGH IGSHAKYQGL TPEAFLQTFS GKVGNNSFAG LSSSLQVLVG SPQLNEKTTA  480
CEARSQHHDC STKHGGNSTR GIDLFNSNHP ANFNGHNQSW CRSDEIPPTT EAQSTWTYRN  540
NEMNCADRTV PRTVPQPNDH EDCRVSGFAE ATNFNDQAGR HQGFRPFSFG TTNHCQGQII  600
DHAVAASKHA EVNNSMKSRD VNLNSRLNTI SFPIATANNE TSTALNDVNR SCITGKGFSG  660
SFSNNDGAAS IVLPSSGLNN KIPSSLGVAD RSSIAARSFN AGYVNENGAS EANNIGNKNN  720
TMVYQTSLAM RPVSPCDLQL GFSGQKQQIL PGYGELRPAA SGSPQLGGMA ANSSIPTRPS  780
QPQFGSMART DALPTGPSQP GSLARPNFVP TGFSQFASRP PTSVPPADSS QFAGSMARQN  840
IPTTSEPTLV LGYTPQMVNG PPAQLGWDLS LSRMVSEGML PVLCIWCNSQ FHHFGPIDAQ  900
QSGSFGFICP ACKEKMSGNP NAPNNGPWQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650380.10.0uncharacterized protein LOC4345880 isoform X1
TrEMBLA0A0E0AWU80.0A0A0E0AWU8_9ORYZ; Uncharacterized protein
STRINGOGLUM08G19590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419