PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G19580.7
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 636aa    MW: 69846.2 Da    PI: 7.1283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G19580.7genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065363385123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k++  +s +  Hi +H
  OGLUM08G19580.7 363 FECPVCNKTYEEQSRYFGHIGSH 385
                      89***************999777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.693188261IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.67E-6192243IPR016177DNA-binding domain
PfamPF014296.3E-5198241IPR001739Methyl-CpG DNA binding
SMARTSM003550.41314337IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280316337IPR007087Zinc finger, C2H2
SMARTSM003550.088363385IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85363390IPR007087Zinc finger, C2H2
PROSITE patternPS000280365385IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
METEVFPVVD LRVLTQSDLD ELAAASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP  60
AAAAAAAAAA ASASAAAAAK LPRGNDKEDS FIAYHLRRLF APDDPSLTEN PSFPQTQTLA  120
RSPSPDPDQL TTNSRGVSVD LVSLSRLADP YDAELGKRTA RMTTEEELMG FISSLEGQWV  180
NQRMRRKLVD ASFFGDHLPS GWRLQLGIER KDRKAWVNCF SYVSPKGQSF ATCQEVSAYL  240
MSLLGYPEFK TDNIEYGSTQ QHGLCADDGV NVLGVQHQIG TSMDSQSNFP VASATFYSHS  300
RDQDETVADD INSYECQQCN LTFHGQSAYA HHLITFHKVS SKRRKSNKVS KFGEPVIGKD  360
GKFECPVCNK TYEEQSRYFG HIGSHAKYQG LTPEAFLQTF SGKVGLSSSL QVLVGSPQLN  420
EKTTACEARS QHHDCSTKHG GNSTRGIDLF NSNHPANFNG HNQSWCRSDE IPPTTEAQST  480
WTYRNNEMNC ADRTVPRTVP QPNDHEDCRV SGFAEATNFN DQAGRHQGFR PFSFGTTNHC  540
QGRIIDHAVA ASKHAEVNNS MKSRDVNLYS RLNTISFPIA TANNETSTAL NDGKQSSGVA  600
SRRTAAVVSE RHGGQVVRHP RTASSVYMPE QGPGWL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682430.0AK068243.1 Oryza sativa Japonica Group cDNA clone:J013149G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650335.10.0uncharacterized protein LOC4345879 isoform X1
RefseqXP_015650336.10.0uncharacterized protein LOC4345879 isoform X1
RefseqXP_015650337.10.0uncharacterized protein LOC4345879 isoform X1
TrEMBLA0A0E0AWU70.0A0A0E0AWU7_9ORYZ; Uncharacterized protein
STRINGOGLUM08G19580.20.0(Oryza glumipatula)