PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G19420.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 363aa    MW: 38005.4 Da    PI: 6.2893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G19420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12138188154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +r++h ++Er+RR+++N+ ++ Lr+l+  +   + ++ + a+i   A++Y+k++
  OGLUM08G19420.1 138 QRMTHIAVERNRRKQMNEYLAVLRSLMAAS---YVQRGDQASIIGGAINYVKEM 188
                      79****************************...9*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.31E-12136193No hitNo description
Gene3DG3DSA:4.10.280.108.8E-13136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15137205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.475137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-9143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV DQGKGVMELV VDDGVVNAFW  60
DGGGGGASSS PVMAAVPGFI EEPDGGNSSV ADAAPPPEHG GASVVGRDGS AAAPAAAAGR  120
RKRRRARTVK NREEVESQRM THIAVERNRR KQMNEYLAVL RSLMAASYVQ RGDQASIIGG  180
AINYVKEMEQ LLQSLEAHRH ARRARTDAAA ALPFAGFFTF PQYSMSAVPT TTTTTVSAAA  240
TENGNAVAGA GAGDDADADA SGSKPSSVAD IEVTMVESHA NLKVLSRRRP RQLLRMVAGL  300
QHHRLAVLHL NVASAGHMAL YSLSLKVEDD CQLTSVDDIA AAVHGIVETI EQEQQQQQKQ  360
SCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120124RKRRR
2138149RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076260.0AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649413.10.0transcription factor bHLH96
SwissprotQ9C7T45e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0AWS40.0A0A0E0AWS4_9ORYZ; Uncharacterized protein
STRINGOGLUM08G19420.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]