PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G18640.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 346aa MW: 35819.2 Da PI: 5.5757

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G18640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.2	2e-14	283	328	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ + OGLUM08G18640.1 283 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQK 328 79***************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-12	279	337	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.944	281	326	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.24E-25	283	333	No hit	No description
SuperFamily	SSF57959	4.13E-11	283	330	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.9E-15	283	329	No hit	No description
Pfam	PF00170	3.8E-12	283	328	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	286	301	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDLKHGGGSE RRGTAAGAGA APLARQGSIY SLTFDEFQST LGGMGGGLGK DFGSMNMDEL 60 LRSIWTAEES QAMASASAAA AAAEGGLQRQ GSLTLPRTLS VKTVDEVWRD FEREASPGAA 120 AADGGGEQQQ PRRQPTLGEM TLEEFLVRAG VVRENTAAAA AMVAAAAAPP VAPRSIPAVN 180 NSSIFFGNYG GVNDAAAAAA GAMGFSPVGI GDPTMGNGLM SGVAGIGGGA ITVAPVDTSV 240 GQMDSAGKGD GDLSSPMAPV PYPFEGVIRG RRSGGNVEKV VERRQRRMIK NRESAARSRA 300 RKQAYTMELE AEVQKLKEQN MELQKKQKET LRPSLDASGL CPFPSE

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDLKHGGGSE RRGTAAGAGA APLARQGSIY SLTFDEFQST LGGMGGGLGK DFGSMNMDEL  60
LRSIWTAEES QAMASASAAA AAAEGGLQRQ GSLTLPRTLS VKTVDEVWRD FEREASPGAA  120
AADGGGEQQQ PRRQPTLGEM TLEEFLVRAG VVRENTAAAA AMVAAAAAPP VAPRSIPAVN  180
NSSIFFGNYG GVNDAAAAAA GAMGFSPVGI GDPTMGNGLM SGVAGIGGGA ITVAPVDTSV  240
GQMDSAGKGD GDLSSPMAPV PYPFEGVIRG RRSGGNVEKV VERRQRRMIK NRESAARSRA  300
RKQAYTMELE AEVQKLKEQN MELQKKQKET LRPSLDASGL CPFPSE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004457	0.0	AP004457.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0013B04.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650926.1	1e-170	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-171	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A0E0AWH7	0.0	A0A0E0AWH7_9ORYZ; Uncharacterized protein
STRING	OGLUM08G18640.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	2e-34	bZIP family protein

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]