PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G17470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 198aa MW: 21456.2 Da PI: 6.9148 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.1e-15 | 12 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEde l +av+++ +W+ Ia ++ +R +k+c++rw ++l OGLUM08G17470.1 12 KTPWTQEEDEALRRAVREHRRQNWAEIALALP-RRGPKSCRLRWCQHL 58 579*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.5e-15 | 66 | 107 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eEd +++ + +G++ W+tIar+++ gR+++ +k+rw++ OGLUM08G17470.1 66 AFTAEEDAIILAQQRVHGNK-WATIARCLP-GRSDNAVKNRWNS 107 79******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.014 | 7 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 11 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.15E-28 | 11 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.11E-14 | 14 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 14 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 7.4E-15 | 15 | 72 | No hit | No description |
SMART | SM00717 | 1.5E-12 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.442 | 65 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-20 | 66 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.11E-10 | 66 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAADGGDGSG RKTPWTQEED EALRRAVREH RRQNWAEIAL ALPRRGPKSC RLRWCQHLSP 60 ELDSRAFTAE EDAIILAQQR VHGNKWATIA RCLPGRSDNA VKNRWNSALR KLLQVQHARG 120 AGSPPAAAAA AAGDDRDDAP VCLQLFPARA GGVKEAGLFA GEKDVEEEDV ATSLTLGLPV 180 LCEAELELRL GPAWPATA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 4e-28 | 12 | 116 | 2 | 106 | MYB3 |
3zqc_D | 4e-28 | 12 | 116 | 2 | 106 | MYB3 |
3zqc_G | 4e-28 | 12 | 116 | 2 | 106 | MYB3 |
3zqc_J | 4e-28 | 12 | 116 | 2 | 106 | MYB3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649306.1 | 1e-112 | transcription factor MYB77 | ||||
Swissprot | Q9SN12 | 8e-35 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A0E0AW41 | 1e-139 | A0A0E0AW41_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G17470.1 | 1e-139 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 6e-37 | myb domain protein 77 |
Publications ? help Back to Top | |||
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