PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G16530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 373aa MW: 40084.5 Da PI: 6.3228 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 31.1 | 5.2e-10 | 23 | 46 | 2 | 25 |
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 +rlrWt +LHerFv av++LGG++ OGLUM08G16530.1 23 ARLRWTGQLHERFVLAVAELGGAD 46 7*********************97 PP | |||||||
2 | G2-like | 37.6 | 4.9e-12 | 76 | 106 | 21 | 51 |
G2-like 21 LGGsekAtPktilelmkvkgLtlehvkSHLQ 51 LG + AtPk++l++m v+gLtl+h+kSHLQ OGLUM08G16530.1 76 LGAIAGATPKSVLRAMAVPGLTLYHLKSHLQ 106 888999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 21 | 47 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 82 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 4.5E-15 | 215 | 255 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MSSQQQQQHA GEAPASAAAA ARARLRWTGQ LHERFVLAVA ELGGADSKPH PRAFLLLLPP 60 LTSLIMGMAD RSALFLGAIA GATPKSVLRA MAVPGLTLYH LKSHLQVRAC VRHAAGELSP 120 AADQLLANSV CIGSWFLTVL SSLPLLQKYR QAVSRGGNGG GGGSGSLNDR SSSSERQPAD 180 HDGDSAADEP RTIAYDGDSD GDTKEALRDS SRSMVQMQRE VQRKLQEQIE VQRHLQLRME 240 AQGRYLQSVL RRAQQVLADH SLASSPEAAT AELSELASAV DIECMSSSSP PRHHRQSAAT 300 DSCVTTTSSS EAESKAAGSK RLHTSDCTVE QPVQGKRAFN FLQRHNQADQ EEEQEEEYAG 360 AEDGSSSEID LNR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650853.1 | 1e-158 | myb-related protein 2 | ||||
TrEMBL | A0A0E0AVR5 | 0.0 | A0A0E0AVR5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G16530.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11264 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 3e-29 | G2-like family protein |