PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G15970.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 296aa    MW: 32798.6 Da    PI: 4.6441
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G15970.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.12e-1090136951
                      HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHH CS
         Homeobox   9 keqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNr 51 
                      + ++e+Le+++  +++p   +r++L  ++    +++ +q+kvWFqNr
  OGLUM08G15970.3  90 PLEVEALERVYTDCPKPISVHRQQLLCECpilaNIEPKQIKVWFQNR 136
                      56789*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF635626.02E-211397IPR006110RNA polymerase, subunit omega/K/RPB6
Gene3DG3DSA:3.90.940.108.4E-242093IPR012293RNA polymerase subunit, RPB6/omega
PfamPF011921.9E-85492IPR006110RNA polymerase, subunit omega/K/RPB6
SuperFamilySSF466891.45E-689136IPR009057Homeodomain-like
CDDcd000861.16E-690136No hitNo description
PfamPF000465.1E-890136IPR001356Homeobox domain
PROSITE profilePS500719.29792136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-994136IPR009057Homeodomain-like
Gene3DG3DSA:3.40.850.109.2E-15205263IPR001752Kinesin motor domain
PfamPF002251.1E-12214263IPR001752Kinesin motor domain
SuperFamilySSF525402.28E-11221265IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500679.484221296IPR001752Kinesin motor domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSHSDVWLLI GYEDEPPEPE IEEEPENNNE DAVDDVVGAE DDREQEKTAR PWKTSKYMTK  60
YERASILGTR ALQISMNAPV MVELEWGTDP LEVEALERVY TDCPKPISVH RQQLLCECPI  120
LANIEPKQIK VWFQNRGYPG NPQGTPALSR LSPPDTLPDP PTVAAHHNGH GTSHENHTQE  180
SESSVEQHDP ESQDDISIKA TPADESPPEE TSAAPTKEQD FVDLAGSEQA AQTHAVGARL  240
KEGCHINRSL LTLTTVIREL RKAKCGLFVT HGVMPIAKID VGRSKLSSHK EAPMVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3h0g_F5e-13549371110DNA-directed RNA polymerases I, II, and III subunit RPABC2
3h0g_R5e-13549371110DNA-directed RNA polymerases I, II, and III subunit RPABC2
5u0s_f5e-13549371110RNA polymerase II subunit Rpb6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218072e-96AK121807.1 Oryza sativa Japonica Group cDNA clone:J033097N04, full insert sequence.
GenBankCT8338542e-96CT833854.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA035N11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0AVI00.0A0A0E0AVI0_9ORYZ; Uncharacterized protein
STRINGOGLUM08G15970.11e-166(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.13e-20HD-ZIP family protein