PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G14700.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 543aa    MW: 57735.9 Da    PI: 4.7688
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G14700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.74.5e-3988186199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rrkC++dC++apyfpa+q+++f n+h+lFG+sn+lk+l++l++e  +dam++l+y+Ae+ra+dPv G+++vi +l++qle   ael
  OGLUM08G14700.1  88 ACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAEL 181
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      +++ +
  OGLUM08G14700.1 182 NTVLH 186
                      98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.01787188IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3788184IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MTSTTTITTT NTTTTTTTTN NNNNPVSTTT TTASHQRQSL PVAARPPHSS SSGTGSGGSH  60
RGASGGGSGG GGGGGGGGGG GGGGTNQACA ACKYQRRKCN PDCPMAPYFP ADQQRRFLNA  120
HRLFGVSNIL KTLRHLKPEL CDDAMRTLIY QAEMRAHDPV GGCCRVICDL ERQLELDTAE  180
LNTVLHHLAM CRQAAAAGAS GSVAAALPAG VLDDACTDLD VTSSNQPLLL SAEQEVVDAL  240
YANQEADAAI LHAADGHHNQ DESQREHHHG QPQQLYDYFY YDSTAGDDVS SKPNLDINVD  300
GMQHFDFDTN YDAEHKVELT SDHQMPVGVD EHNQIDDKGF EIKSAPSLVD VFDLRQEEEQ  360
MQTVDVNTDI EVKEMVDMNA DIDVKTMVDE NSNIDIIKTM VDVNADIVDV VKTVVDVNGD  420
IGVKEELPEL ENGKIIADVT PGSGIHCARM AAGELLAAVP LLSAGDASFA GGGEAFRLGC  480
YRSSPAIAGS TTAMSGSALR RRCGRRRPLR REAAWWLWLV GCMAGAHEAS LLAGARWRGG  540
CDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-26842087127LOB family transfactor Ramosa2.1
5ly0_B3e-26842087127LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16784SGGGGGGGGGGGGGGGGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053880.0AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883262.10.0uncharacterized protein LOC9266602
TrEMBLA0A0E0AV380.0A0A0E0AV38_9ORYZ; Uncharacterized protein
STRINGOGLUM08G14700.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-36LOB domain-containing protein 22