PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G13570.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 598aa    MW: 65663.1 Da    PI: 8.4847
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G13570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR377e-12171209342
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  OGLUM08G13570.1 171 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 209
                      789************************.********9875 PP
2TCR47.34.1e-15252292141
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  OGLUM08G13570.1 252 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 292
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-7169209IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.443170292IPR005172CRC domain
PfamPF036385.0E-8172206IPR005172CRC domain
SMARTSM011147.4E-16252293IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11255290IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAALLHALGP PRTPPCYQLP LAKVNSSLPL  60
WSPVICPSTF AQKRPMSLPS PPPAKKLQVQ QSSSMLPQDF PKLEVLPVEK PTKLQVRRSP  120
QHVSPALKQD SPKMEKPLLP RPATFIDVML SSQKPSSEMW SETKDVTLTR KTNCSCKYSK  180
CLKLYCECFE KGRYCIGCNC TNCCNNVNHE NARQDAINVA LERNPAAFMP KVSNSTAHNC  240
ESKAAEGDIM GKHTKGCKCK RTECLKKYCE CFKASVFCSE NCRCTGCKNY KSNADRISQK  300
NTVHAHHVQN PASSGMVGQS VIIFHAAEND SSLSLAASVS DHSINNNTSH ALSCSLTSSV  360
TREDAKSLVK YVPHEVTYRP SLADIIQIED VNELCNLLIL VSRQAGATLL ESGMKENTKR  420
KKLNRVDSCL SSTNHDREAI QKEPAKQMCS LEKSSNEVLI AEGRLELPRA DPFDIQKGNK  480
RPLSPGTQAL MCDEQDAVFQ DSKAPDATPS TTEENLVDIF KEQEKRVLTN FRDYLCKLAT  540
CGKLQELKLS LASTNCSEQA FADHGNNSSI TRVAKVTRIR QTIPQFSSKA ASTTALDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2517429614127Protein lin-54 homolog
5fd3_B2e-2517429614127Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650564.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A0E0AUQ10.0A0A0E0AUQ1_9ORYZ; Uncharacterized protein
STRINGOGLUM08G13570.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.22e-62Tesmin/TSO1-like CXC domain-containing protein