PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G12590.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 385aa    MW: 42032.8 Da    PI: 10.2225
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G12590.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.44.2e-151972272555
          G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      ++ tPkti+++m+vkgLtl h+kSHLQkYRl
  OGLUM08G12590.3 197 NESTPKTIMRTMGVKGLTLFHLKSHLQKYRL 227
                      578***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015572.1E-9196228IPR006447Myb domain, plants
SuperFamilySSF466891.79E-5197229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-14197228IPR009057Homeodomain-like
PfamPF143791.2E-20268313IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MQDAPCSGST GVAARGRSMS DKLLRSSAEE VCAPAEMAEQ GSSSAWGGSH SKQVVFAAES  60
AAEQALAAPR ALDAFTRPFR RAAVSAGWRF TIVGTRKYAF PRDLTRTSSL VMMCVILVAG  120
RNRATCSSCS FGTVRMTSSP RFTSDRSSRC RSRPPPEPAV RTPAAAAAPR LLRCFKDARR  180
ACFLAVSKKN EQGERKNEST PKTIMRTMGV KGLTLFHLKS HLQKYRLGKQ SGKEMAEQSK  240
DASYILGAQS GTNLSPTVPT PDLKESQELK EALRAQMEVQ RKLHEQVEVQ RHVQIRMEAY  300
QNYIDTLLEK ACNIVSEQLN GFSISDHDLT SAGVMLSSSD TLSPSIFHQL SVSSISLHSP  360
GGKSSPFAAD ADLFFQKAPE KRKSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038730.0AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence.
GenBankCT8342320.0CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0AUD40.0A0A0E0AUD4_9ORYZ; Uncharacterized protein
STRINGOGLUM08G12590.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.13e-41G2-like family protein