PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G12590.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 431aa MW: 46952.4 Da PI: 10.2033

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G12590.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	40.9	4.6e-13	34	61	1	28
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAt 28 kprlrWt +LH+rFv+av+qLGG++ A OGLUM08G12590.2 34 KPRLRWTADLHDRFVDAVAQLGGPDTAR 61 79***********************996 PP
2	G2-like	47.2	4.8e-15	243	273	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++ tPkti+++m+vkgLtl h+kSHLQkYRl OGLUM08G12590.2 243 NESTPKTIMRTMGVKGLTLFHLKSHLQKYRL 273 578***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-26	31	62	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-8	34	60	IPR006447	Myb domain, plants
TIGRFAMs	TIGR01557	2.5E-9	242	274	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.15E-5	243	275	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-26	248	274	IPR009057	Homeodomain-like
Pfam	PF14379	1.4E-20	314	359	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MFPGLIHHHR LLDADVGGGG GGSSAGLVLT ADPKPRLRWT ADLHDRFVDA VAQLGGPDTA 60 RGRSMSDKLL RSSAEEVCAP AEMAEQGSSS AWGGSHSKQV VFAAESAAEQ ALAAPRALDA 120 FTRPFRRAAV SAGWRFTIVG TRKYAFPRDL TRTSSLVMMC VILVAGRNRA TCSSCSFGTV 180 RMTSSPRFTS DRSSRCRSRP PPEPAVRTPA AAAAPRLLRC FKDARRACFL AVSKKNEQGE 240 RKNESTPKTI MRTMGVKGLT LFHLKSHLQK YRLGKQSGKE MAEQSKDASY ILGAQSGTNL 300 SPTVPTPDLK ESQELKEALR AQMEVQRKLH EQVEVQRHVQ IRMEAYQNYI DTLLEKACNI 360 VSEQLNGFSI SDHDLTSAGV MLSSSDTLSP SIFHQLSVSS ISLHSPGGKS SPFAADADLF 420 FQKAPEKRKS Y

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MFPGLIHHHR LLDADVGGGG GGSSAGLVLT ADPKPRLRWT ADLHDRFVDA VAQLGGPDTA  60
RGRSMSDKLL RSSAEEVCAP AEMAEQGSSS AWGGSHSKQV VFAAESAAEQ ALAAPRALDA  120
FTRPFRRAAV SAGWRFTIVG TRKYAFPRDL TRTSSLVMMC VILVAGRNRA TCSSCSFGTV  180
RMTSSPRFTS DRSSRCRSRP PPEPAVRTPA AAAAPRLLRC FKDARRACFL AVSKKNEQGE  240
RKNESTPKTI MRTMGVKGLT LFHLKSHLQK YRLGKQSGKE MAEQSKDASY ILGAQSGTNL  300
SPTVPTPDLK ESQELKEALR AQMEVQRKLH EQVEVQRHVQ IRMEAYQNYI DTLLEKACNI  360
VSEQLNGFSI SDHDLTSAGV MLSSSDTLSP SIFHQLSVSS ISLHSPGGKS SPFAADADLF  420
FQKAPEKRKS Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103873	0.0	AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence.
GenBank	CT834232	0.0	CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650961.1	1e-130	protein PHR1-LIKE 3
TrEMBL	A0A0E0AUD3	0.0	A0A0E0AUD3_9ORYZ; Uncharacterized protein
STRING	OGLUM08G12590.1	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	7e-41	G2-like family protein