PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G12590.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 451aa MW: 49275 Da PI: 10.2182

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G12590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	47.1	5.1e-15	263	293	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++ tPkti+++m+vkgLtl h+kSHLQkYRl OGLUM08G12590.1 263 NESTPKTIMRTMGVKGLTLFHLKSHLQKYRL 293 578***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	2.6E-9	262	294	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.33E-5	263	295	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-13	263	294	IPR009057	Homeodomain-like
Pfam	PF14379	1.4E-20	334	379	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MDGGEGGVLR EGGEVGGEGW KRKSSLGHVA WSNLPTQRVS LDRCLGEKEL GVASPSEASR 60 GLAKERLFCF FERKQTASAA RGRSMSDKLL RSSAEEVCAP AEMAEQGSSS AWGGSHSKQV 120 VFAAESAAEQ ALAAPRALDA FTRPFRRAAV SAGWRFTIVG TRKYAFPRDL TRTSSLVMMC 180 VILVAGRNRA TCSSCSFGTV RMTSSPRFTS DRSSRCRSRP PPEPAVRTPA AAAAPRLLRC 240 FKDARRACFL AVSKKNEQGE RKNESTPKTI MRTMGVKGLT LFHLKSHLQK YRLGKQSGKE 300 MAEQSKDASY ILGAQSGTNL SPTVPTPDLK ESQELKEALR AQMEVQRKLH EQVEVQRHVQ 360 IRMEAYQNYI DTLLEKACNI VSEQLNGFSI SDHDLTSAGV MLSSSDTLSP SIFHQLSVSS 420 ISLHSPGGKS SPFAADADLF FQKAPEKRKS Y

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MDGGEGGVLR EGGEVGGEGW KRKSSLGHVA WSNLPTQRVS LDRCLGEKEL GVASPSEASR  60
GLAKERLFCF FERKQTASAA RGRSMSDKLL RSSAEEVCAP AEMAEQGSSS AWGGSHSKQV  120
VFAAESAAEQ ALAAPRALDA FTRPFRRAAV SAGWRFTIVG TRKYAFPRDL TRTSSLVMMC  180
VILVAGRNRA TCSSCSFGTV RMTSSPRFTS DRSSRCRSRP PPEPAVRTPA AAAAPRLLRC  240
FKDARRACFL AVSKKNEQGE RKNESTPKTI MRTMGVKGLT LFHLKSHLQK YRLGKQSGKE  300
MAEQSKDASY ILGAQSGTNL SPTVPTPDLK ESQELKEALR AQMEVQRKLH EQVEVQRHVQ  360
IRMEAYQNYI DTLLEKACNI VSEQLNGFSI SDHDLTSAGV MLSSSDTLSP SIFHQLSVSS  420
ISLHSPGGKS SPFAADADLF FQKAPEKRKS Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103873	0.0	AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence.
GenBank	CT834232	0.0	CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0AUD2	0.0	A0A0E0AUD2_9ORYZ; Uncharacterized protein
STRING	OGLUM08G12590.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-40	G2-like family protein