PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G10220.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 375aa    MW: 39896.4 Da    PI: 5.3964
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G10220.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.6e-083173502154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  OGLUM08G10220.2 317 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 350
                      569*****************************87 PP
2ELK26.51.4e-09271292122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++L+++++E++
  OGLUM08G10220.2 271 ELKHELKQGYKEKLIDIREEIL 292
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.3E-20107151IPR005540KNOX1
PfamPF037907.0E-18109150IPR005540KNOX1
SMARTSM012565.5E-27160216IPR005541KNOX2
PfamPF037911.4E-18168215IPR005541KNOX2
PROSITE profilePS5121310.039271291IPR005539ELK domain
SMARTSM011880.004271292IPR005539ELK domain
PROSITE profilePS5007111.742291354IPR001356Homeobox domain
SuperFamilySSF466894.23E-16293358IPR009057Homeodomain-like
SMARTSM003894.8E-11293358IPR001356Homeobox domain
CDDcd000861.25E-11294355No hitNo description
Gene3DG3DSA:1.10.10.605.8E-25298355IPR009057Homeodomain-like
PfamPF059201.1E-17311350IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAFHDHLPHE MTMQALGADD AAVAAAAAAG GVGAGGAPAW MRYNDGSFLH LQTTSDSSAS  60
PSGAAAAAAA AAAAAAAAGV QQWMGGGGGG EDAVAAAMGG GGEADAARCK AEILAHPLYE  120
QLLSAHVACL RIATPVDQLP RIDAQLAQSQ GVVAKYSALA AAAAGDDGRE LDQFMTHYVL  180
LLCSFKEQLQ QHVRVHAMEA VMACWELEQN LQSLTGASPG EGTGATMSDG EDDQADSEAN  240
MYDPSLDGAD NMGFGLPTES ERSLMERVRQ ELKHELKQGY KEKLIDIREE ILRKRRAGKL  300
PGDTTSTLKA WWQSHAKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNPSSST  360
SVKTKRKSNA GDNNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12294358872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345860.0CT834586.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650701.20.0LOW QUALITY PROTEIN: homeobox protein knotted-1-like 13
SwissprotQ0J6N40.0KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0E0ATH50.0A0A0E0ATH5_9ORYZ; Uncharacterized protein
STRINGOGLUM08G10220.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-157KNOTTED1-like homeobox gene 3