PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM08G10220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 314aa MW: 34180.1 Da PI: 5.5677 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24 | 6.7e-08 | 256 | 289 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + OGLUM08G10220.1 256 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 289 569*****************************87 PP | |||||||
2 | ELK | 26.8 | 1.2e-09 | 210 | 231 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ OGLUM08G10220.1 210 ELKHELKQGYKEKLIDIREEIL 231 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.6E-17 | 46 | 90 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.4E-16 | 50 | 89 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.5E-27 | 99 | 155 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-18 | 107 | 154 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.039 | 210 | 230 | IPR005539 | ELK domain |
SMART | SM01188 | 0.004 | 210 | 231 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 230 | 293 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.17E-16 | 232 | 297 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.8E-11 | 232 | 297 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.72E-12 | 233 | 294 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-25 | 237 | 294 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.4E-18 | 250 | 289 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence Send to blast |
MAFHDHLPHE MTMQALGADD AATTSDSSAS PSGAAAAAAA AAAAAAAAGA EILAHPLYEQ 60 LLSAHVACLR IATPVDQLPR IDAQLAQSQG VVAKYSALAA AAAGDDGREL DQFMTHYVLL 120 LCSFKEQLQQ HVRVHAMEAV MACWELEQNL QSLTGASPGE GTGATMSDGE DDQADSEANM 180 YDPSLDGADN MGFGLPTESE RSLMERVRQE LKHELKQGYK EKLIDIREEI LRKRRAGKLP 240 GDTTSTLKAW WQSHAKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTS 300 VKTKRKSNAG DNNS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 9e-13 | 233 | 297 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Isoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT834586 | 0.0 | CT834586.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056I08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650701.2 | 0.0 | LOW QUALITY PROTEIN: homeobox protein knotted-1-like 13 | ||||
Swissprot | Q0J6N4 | 0.0 | KNOSD_ORYSJ; Homeobox protein knotted-1-like 13 | ||||
TrEMBL | A0A0E0ATH4 | 0.0 | A0A0E0ATH4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G10220.2 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-156 | KNOTTED1-like homeobox gene 3 |