PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G06200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 31726.2 Da PI: 8.5858 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.1 | 8.6e-50 | 6 | 153 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhP+d+elv +yL +k+++ +i +vd++k+ePwdLp ++ + kewyfFs rd+kyatg+r+nrat+sgyWk OGLUM08G06200.1 6 MPPGFRFHPRDDELVLDYLLHKLAAGGrgggvY---GggggvAIVDVDLNKCEPWDLPDAACVGGKEWYFFSLRDRKYATGHRTNRATRSGYWK 96 79********************99888555541...1455546***************7666789***************************** PP NAM 85 atgkdkevlsk......kgel........vglkktLvfykgrapkgektdWvmheyrle 129 atgkd++++++ + vg++ktLvfy+grapkg+kt+Wvmhe+rle OGLUM08G06200.1 97 ATGKDRSITRRssissgE--PsssaaaaaVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 153 **********86666550..155566666***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-55 | 3 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.995 | 6 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-26 | 7 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MVEARMPPGF RFHPRDDELV LDYLLHKLAA GGRGGGVYGG GGGVAIVDVD LNKCEPWDLP 60 DAACVGGKEW YFFSLRDRKY ATGHRTNRAT RSGYWKATGK DRSITRRSSI SSGEPSSSAA 120 AAAVGMRKTL VFYRGRAPKG RKTEWVMHEF RLEPQPLHLK EDWVLCRVFY KTRQTIPSPS 180 SEEAVTLPNE LDLPAMPSLP PLIDAYIAFD SAPTTMPSMV GSYEQVSCFS GLPALPMKGS 240 ISFGDLLAMD TSAEKKAIRV LHNSNTAKLE LSPDWGQESG LSQMWNPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-43 | 1 | 171 | 15 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120197 | 0.0 | AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648318.1 | 0.0 | NAC domain-containing protein 21/22 isoform X1 | ||||
Swissprot | Q84TE6 | 1e-77 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0AS04 | 0.0 | A0A0E0AS04_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G06200.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-75 | NAC domain containing protein 1 |