PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G04040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21011.2 Da PI: 4.3582 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 102.9 | 2.9e-32 | 14 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqqle 88 aCaaC++++ +C+++C lapyfpa++pk+f++++ +FG++++l + +a ++ r + m+++vy A+ar++dP+ Ga+g i+klqqql+ OGLUM08G04040.1 14 ACAACAHQGAsSCPPNCGLAPYFPADKPKRFWYARLMFGMERILGFSEAEKQGIRpngstVISMAAVVYLADARVEDPILGAYGRIRKLQQQLD 107 7********999************************************976555666666899******************************* PP DUF260 89 qlkaelallkee 100 +lkae a+++++ OGLUM08G04040.1 108 RLKAERARQHHP 119 *******99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.489 | 13 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-23 | 14 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MASPSPPTTT TQQACAACAH QGASSCPPNC GLAPYFPADK PKRFWYARLM FGMERILGFS 60 EAEKQGIRPN GSTVISMAAV VYLADARVED PILGAYGRIR KLQQQLDRLK AERARQHHPA 120 TASPAPADNV ALEPEPEPFH QPPAQPSTPP ALAIPDEDEE EEEDDDDDED EEEEGHAPVD 180 DDVPCAKRRR TN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005605 | 0.0 | AP005605.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_C01. | |||
GenBank | AP005847 | 0.0 | AP005847.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ9990_A01. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649522.1 | 7e-77 | LOB domain-containing protein 1 | ||||
TrEMBL | A0A0E0AR79 | 1e-137 | A0A0E0AR79_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G04040.1 | 1e-138 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16910 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-13 | LOB domain-containing protein 22 |