PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G03650.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 325aa    MW: 33644.5 Da    PI: 7.0644
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G03650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07263306243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g+W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  OGLUM08G03650.1 263 GSWSAGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 306
                      79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.066170223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-5172207IPR009057Homeodomain-like
PROSITE profilePS500905.877172213IPR017877Myb-like domain
SuperFamilySSF466893.74E-7172215IPR009057Homeodomain-like
CDDcd001677.06E-5173215No hitNo description
PfamPF139215.5E-5174214No hitNo description
SMARTSM007176.1E-7261313IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-10261311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-6263310IPR009057Homeodomain-like
PROSITE profilePS500906.922263311IPR017877Myb-like domain
PfamPF002491.1E-6263306IPR001005SANT/Myb domain
CDDcd001673.06E-5269311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEFIDDDWDY QPRARVIHSR ASANASTSTT TSSAQPSRSL PHAAACAAAA VALLAAAYYL  60
LLPDYQVLAS VAVWVASSLL LAPFAPSSAT GGDVSVGRGD PLPEQEPVEE PVSDPAPTSR  120
RGRRHSSSSN PTPPPPKPSD PIAPPPPRHA AAAAAAAATA VADGGEAVED AGEWTDQEMD  180
ILRRQMVKHP AGEPQRWEKI AAAFGGRRTP ESVIRAAKSG GGAAAAGASF DQFLRKRKPL  240
DPRAEAADAG GGNAGGGGES GDGSWSAGDD RALLNALKEF PKDTAMRWEK VAAAVPGKTK  300
AACMKRVTEL KRDFRSSKAA SEAAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238LRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736170.0AK073617.1 Oryza sativa Japonica Group cDNA clone:J033051J11, full insert sequence.
GenBankAK1039730.0AK103973.1 Oryza sativa Japonica Group cDNA clone:001-016-D01, full insert sequence.
GenBankAP0046980.0AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659147.11e-146PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0E0AR310.0A0A0E0AR31_9ORYZ; Uncharacterized protein
STRINGOGLUM08G03650.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-41MYB_related family protein