PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G03540.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 732aa MW: 80978.2 Da PI: 4.426

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G03540.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.3e-52	9	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp GfrFhPtdeelv +yLk k++g+ +++evi+e+d++k+ePwdLp k +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ + OGLUM08G03540.2 9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEAEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVI 102 699**********************99999***********96446677888******************************** PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 sk k++++g+kktLvf++grapkge+t W+mheyr OGLUM08G03540.2 103 RSKgdkkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142 988777777***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-59	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	57.568	9	163	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MAVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAE VIPEIDVCKC EPWDLPDKSL 60 IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL 120 VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG 180 YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN 240 ATTNEVNISH MPHHGLDGGA KASPSAGAFP QLIGSQQNIH DNNELATVSA PMLPHEDFNN 300 FPLGAIGNFD GNMNPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIIP TEFENHGVMQ 360 GEFMDDLSGL ENLDFWPDDR NPQLSALYED TLLLHSTDQD VLSMDSGAES LQDLFNSMDD 420 SNARNNVWGN EPFLQGTGFP MSWPLQPNSA FPNQGTANKR LMLQLSESLS PDFDASMTRD 480 ECEDEEPGIV VTSKYVNEAP EESTAEKDMP SDGDDAEPTG ITILRRRHAP TASSFSDGDD 540 AESTGITILR QHQAPNASLL SDGDDAESTG ITILRRRQAP TASSASSFTQ QGAAVRRVRL 600 QSNLDAAPCS SVDGSSSCII NEGESERTME KPEIEENAGS TLAEGGTCHE DDQKEHDASA 660 ANAKSVLRLR KTAEGSDKEN KQEEEEGVLD SHVRAPGNKR GFPWYIIWLV LSVALVLLIS 720 LGIYGWDTLK ES

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MAVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG  180
YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN  240
ATTNEVNISH MPHHGLDGGA KASPSAGAFP QLIGSQQNIH DNNELATVSA PMLPHEDFNN  300
FPLGAIGNFD GNMNPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIIP TEFENHGVMQ  360
GEFMDDLSGL ENLDFWPDDR NPQLSALYED TLLLHSTDQD VLSMDSGAES LQDLFNSMDD  420
SNARNNVWGN EPFLQGTGFP MSWPLQPNSA FPNQGTANKR LMLQLSESLS PDFDASMTRD  480
ECEDEEPGIV VTSKYVNEAP EESTAEKDMP SDGDDAEPTG ITILRRRHAP TASSFSDGDD  540
AESTGITILR QHQAPNASLL SDGDDAESTG ITILRRRQAP TASSASSFTQ QGAAVRRVRL  600
QSNLDAAPCS SVDGSSSCII NEGESERTME KPEIEENAGS TLAEGGTCHE DDQKEHDASA  660
ANAKSVLRLR KTAEGSDKEN KQEEEEGVLD SHVRAPGNKR GFPWYIIWLV LSVALVLLIS  720
LGIYGWDTLK ES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	9	164	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	9	164	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	9	164	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	9	164	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-45	9	164	20	169	NAC domain-containing protein 19
3swm_B	2e-45	9	164	20	169	NAC domain-containing protein 19
3swm_C	2e-45	9	164	20	169	NAC domain-containing protein 19
3swm_D	2e-45	9	164	20	169	NAC domain-containing protein 19
3swp_A	2e-45	9	164	20	169	NAC domain-containing protein 19
3swp_B	2e-45	9	164	20	169	NAC domain-containing protein 19
3swp_C	2e-45	9	164	20	169	NAC domain-containing protein 19
3swp_D	2e-45	9	164	20	169	NAC domain-containing protein 19
4dul_A	2e-45	9	164	17	166	NAC domain-containing protein 19
4dul_B	2e-45	9	164	17	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT832968	0.0	CT832968.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203B11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650289.1	0.0	NAC domain-containing protein 14 isoform X2
TrEMBL	A0A0E0AR20	0.0	A0A0E0AR20_9ORYZ; Uncharacterized protein
STRING	OGLUM08G03540.2	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5172	38	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	4e-70	NAC 014