PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G00350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 33758.6 Da PI: 6.6475 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.7 | 2.8e-50 | 14 | 144 | 1 | 125 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPt+eelv +yL++kv+++k++l ++i+e+d+y++ePwdL++ + e++ewyfFs +d+ky++g+r+nrat++g+Wkat OGLUM08G00350.1 14 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQELDLYRIEPWDLQErckyG--GhggdEQTEWYFFSYKDRKYPSGTRTNRATAAGFWKAT 104 69****************************.99**************9535441..14443666****************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhe 125 g+dk+vls+ +++++g++ktLvfykgrap+g+ktdW++he OGLUM08G00350.1 105 GRDKPVLSSpSTRVIGMRKTLVFYKGRAPNGRKTDWIIHE 144 *******9988899*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-51 | 8 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.916 | 14 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-24 | 15 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDRHEEEAGE SPCVPPGFRF HPTEEELVGY YLARKVASQK IDLDIIQELD LYRIEPWDLQ 60 ERCKYGGHGG DEQTEWYFFS YKDRKYPSGT RTNRATAAGF WKATGRDKPV LSSPSTRVIG 120 MRKTLVFYKG RAPNGRKTDW IIHERKKPMP NQQQHRLSYG CIPGSYGAGA YAAVPDNYSL 180 LLHHDNPSFA GRPLMGAAAS ALFANNNNNS VVDHSNILSS ESKLHFSDMM PPLESPTIVD 240 GEGYVSQASS CVDVDQQAGI VDWNLLTSLL PPPAHQLFHH LPSASSSKNS NNISSSGFID 300 DRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-49 | 3 | 144 | 4 | 137 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110611 | 0.0 | AK110611.1 Oryza sativa Japonica Group cDNA clone:002-168-H04, full insert sequence. | |||
GenBank | AP004654 | 0.0 | AP004654.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0015C07. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. | |||
GenBank | JN634072 | 0.0 | JN634072.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650248.1 | 0.0 | NAC domain-containing protein 105 | ||||
Refseq | XP_025883308.1 | 0.0 | NAC domain-containing protein 105 | ||||
TrEMBL | A0A0E0APV7 | 0.0 | A0A0E0APV7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G00350.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2594 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 2e-71 | vascular related NAC-domain protein 1 |