PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G27460.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 403aa    MW: 44013.3 Da    PI: 7.1724
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G27460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-11348397147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r++W++  ++ l+++v+++G+g+Wk I    +   + R+  ++k++++++
  OGLUM07G27460.1 348 RKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYPdvfEDRSTVDLKDKFRNL 397
                      789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.141343402IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-11344397IPR009057Homeodomain-like
SuperFamilySSF466891.64E-13346398IPR009057Homeodomain-like
SMARTSM007171.2E-7347400IPR001005SANT/Myb domain
PfamPF002491.4E-9348397IPR001005SANT/Myb domain
CDDcd116602.73E-21349399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MTPADAFLIL DFLAGNRLIP HSVFTTLLAS LPSVSPHTSP RLRAGLALRA LDSALSISES  60
SEMDAPTLLR KARAVLADPD LAPFFPQHLA APASADDAPA AAVAHLNRLL DVEWASLPPS  120
SLEIAAERIV GSQALHSWAN ADHAQRSKLR LLAEKYSTSL YQFYSPLAVS AVGESTALEI  180
LDTLQRPDAS TNHPGTLPQV DNAPETNSAS HCAQQNDGAK SGLVKQNAEA DRPQQDSTRH  240
QQDSVQGASN SQLKESSVTM ESIRGTGPDI TGFMEEATPR VARQFAPDNI KNHQVTGSKR  300
SLMERNPTAS TYEWDGSDSE GKRPAAKRRL PIFERTAKPS PTAAHKTRKK WSEKQEKTLL  360
EGVEKYGKGN WKDIKMAYPD VFEDRSTVDL KDKFRNLERH LCA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0719400.0AK071940.1 Oryza sativa Japonica Group cDNA clone:J013077N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646481.10.0uncharacterized protein LOC4344404
TrEMBLA0A0E0APQ50.0A0A0E0APQ5_9ORYZ; Uncharacterized protein
STRINGOGLUM07G27460.30.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-11TRF-like 5