PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G20830.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 379aa    MW: 41913.5 Da    PI: 6.4337
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G20830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.7e-30117173259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+p+sYY+Ct+ +C v+k+ve+sa d+++v+i+Y+g+H+he
  OGLUM07G20830.1 117 DDGYNWRKYGQKAVKGGEYPKSYYKCTHLNCLVRKNVEHSA-DGRIVQIIYRGQHTHE 173
                      8****************************************.***************8 PP
2WRKY103.51.2e-32285343159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC vkk+vers e+p++v++tYeg+H h+
  OGLUM07G20830.1 285 LDDGYRWRKYGQKVVKGNPYPRSYYKCTYLGCDVKKQVERSVEEPNAVITTYEGKHIHD 343
                      59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-27111175IPR003657WRKY domain
SuperFamilySSF1182901.26E-24114175IPR003657WRKY domain
SMARTSM007742.5E-32116174IPR003657WRKY domain
PfamPF031069.9E-23117173IPR003657WRKY domain
PROSITE profilePS5081123.376117175IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-34272345IPR003657WRKY domain
SuperFamilySSF1182902.88E-29278345IPR003657WRKY domain
PROSITE profilePS5081134.762280345IPR003657WRKY domain
SMARTSM007742.3E-38285344IPR003657WRKY domain
PfamPF031063.4E-25286342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MWFMDSANIA PHFADNGTRL FSVQGNFETF PQQDLVPLTA QEVHSKCITF GRAENLSFIP  60
LATSALVSQH TGSSSVNVTP LQEILTSPSQ ISNVNTESIG VLQGLPASSI VLDRPTDDGY  120
NWRKYGQKAV KGGEYPKSYY KCTHLNCLVR KNVEHSADGR IVQIIYRGQH THERPSKRRF  180
KDCGGISDDL DDFSGTTGTS VRSQPDYDDY CRKPIIPSGT MVAPLVKKIE DGDDQLSGSS  240
DNQDEHDDEV RTADGASGDA SANERNVPAP GQKIIVSTTS EIDLLDDGYR WRKYGQKVVK  300
GNPYPRSYYK CTYLGCDVKK QVERSVEEPN AVITTYEGKH IHDVPAARNK SHVVANASLL  360
QNTKSNTYCT EQSYTTITC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-35117346878Probable WRKY transcription factor 4
2lex_A8e-35117346878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418470.0AY341847.1 Oryza sativa (japonica cultivar-group) WRKY6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646950.20.0probable WRKY transcription factor 3
TrEMBLA0A0E0AM800.0A0A0E0AM80_9ORYZ; Uncharacterized protein
STRINGOGLUM07G20830.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-78WRKY DNA-binding protein 3