PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G18530.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 958aa    MW: 106036 Da    PI: 8.3113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G18530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.1e-19456555198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  OGLUM07G18530.1 456 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 547
                      89**************************777788889***************9989999999***9.********************987.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  OGLUM07G18530.1 548 KLVMGFRK 555
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.40.330.102.3E-29452557IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-19453555IPR015300DNA-binding pseudobarrel domain
CDDcd100175.93E-22454555No hitNo description
PROSITE profilePS5086311.251456557IPR003340B3 DNA binding domain
SMARTSM010195.7E-21456556IPR003340B3 DNA binding domain
PfamPF023628.4E-16456555IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17711761IPR011124Zinc finger, CW-type
PfamPF074965.0E-11716758IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP HPQQPPQAVV SVGVGPPPPT  60
PQHQQQQQQQ QGPPGHAPPQ QRPRICFNAH CKDPKSDGPR RRGWRLRNGD FAELCDRCYH  120
SFEHGGFCET FHLEVAGWRN CESCGKRLHC GCIVSVHAFV HLDAGGVECV MCARKSHAAM  180
APSQIWSSSM HMAQNVADRK DNFVKSWRPP AGQFSSQWRQ NNMWSMSTMQ SDLQQRLAFE  240
FDRPSGSEKL LPGRTFIHAH EKKFDDMHDR STTPAGMNQI MRERYANGHT QHTTLDPTYA  300
YTLYHREGTN PNLHDHSHHA GENDHLTARK GVTSDSCSSV STTFKLDSHH PSILKDDPSA  360
VPAGLSPNFS SANGPKDHIR IGPTQQQQQM ASSSLQKQFY SHSVIDNDFQ AQLRNGRPRM  420
DAKARSQLLP RYWPRITDQE LQHLSGDSNS VITPLFEKML SASDAGRIGR LVLPKKCAEA  480
YFPAISQAEG LPLKVQDATG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF  540
SRIDPEGKLV MGFRKATNLS AEQDQPTKPA NGVPPPPEAN NKVVVPDSSP NAAVPRPIKV  600
NTESKSSSPV EQATACKIDK GALPQKEGPG TSSSSPLPVK RKATSVGPKI KRFRMDSEES  660
MELKITWEEA QELLRPPPKA PSIVVVDGHE FEEYEEPPIL GRRTYFVTDQ SGENHQWAQC  720
EDCSKWRKLP VDALLPSKWT CSDNKWDSER SSCDSAQEIN MEELGEMIPI KPGAAKKTKG  780
KVDTDNIDVS DGLDTLANLA ILGEGESLPS QPTTRHPRHR PGCSCIVCIQ PPSGKGPKHK  840
QTCTCNVCMT VRRRFRTLMM RREKRQQSEK DSGVPRKREP GQSSEPVPQS GSGAHPTSTS  900
SPPPRADTNG EGPEDMSIDN KRTSSPVKNQ IDLNSQPERE DEQSPKSDAT RLLRDNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C5e-644345581125B3 domain-containing transcription repressor VAL1
5yzz_C5e-644345581125B3 domain-containing transcription repressor VAL1
5z00_C5e-644345581125B3 domain-containing transcription repressor VAL1
5z00_G5e-644345581125B3 domain-containing transcription repressor VAL1
5z00_K5e-644345581125B3 domain-containing transcription repressor VAL1
5z00_M5e-644345581125B3 domain-containing transcription repressor VAL1
6j9a_A4e-644345582126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0E0ALF50.0A0A0E0ALF5_9ORYZ; Uncharacterized protein
STRINGOGLUM07G18530.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-142HSI2-like 1