PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G15250.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 219aa    MW: 22307.5 Da    PI: 10.8356
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G15250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.6e-41112189178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqve+C +dlsea +y+rrhkvC++hsk pvvlv+gl+qrfCqqCsrfhel+efD++krsCrrrLa+hnerrrk++a
  OGLUM07G15250.1 112 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAA 189
                      6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-34105174IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.351110187IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.2E-38111191IPR004333Transcription factor, SBP-box
PfamPF031101.2E-31113186IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDRKDKARKN FSSSSSSSAA SMAALAAAAA AGDGGAALPS PMEEDKKPRL VASSLAPVAG  60
GGGGGSSSSA AVAAGASSSS SSSSMATAAR RGASRAGGGA PSGGGGGGGG PRCQVERCGV  120
DLSEAGRYNR RHKVCQTHSK EPVVLVAGLR QRFCQQCSRF HELTEFDDAK RSCRRRLAGH  180
NERRRKSAAD TAHGENCRHA DQDAGRSHQG TGNPPFQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-36103186184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8995810.0KT899581.1 Oryza sativa Japonica Group isolate Dongjing GLW7 (GLW7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645415.13e-91squamosa promoter-binding-like protein 13
SwissprotQ6Z4613e-92SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A0E0AKB61e-152A0A0E0AKB6_9ORYZ; Uncharacterized protein
STRINGOGLUM07G15250.11e-152(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.23e-37squamosa promoter binding protein-like 4