PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G14800.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 372aa    MW: 38125.9 Da    PI: 6.7492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G14800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.3e-161356144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     rg W++eEde+lv+++ ++G  +W++++++ g+ R++k+c++rw
  OGLUM07G14800.1 13 RGLWSPEEDEKLVRYISEHGHSCWSSVPKHAGLQRCGKSCRLRW 56
                     788***************************************** PP
2Myb_DNA-binding25.92.3e-0855772346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W+ Ia++++ gRt++++k++w++
  OGLUM07G14800.1 55 RWAQIAKHLP-GRTDNEVKNFWNS 77
                     4*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-20456IPR009057Homeodomain-like
PROSITE profilePS5129420.178864IPR017930Myb domain
SMARTSM007176.0E-151281IPR001005SANT/Myb domain
PfamPF002495.5E-151357IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-181380IPR009057Homeodomain-like
CDDcd001671.04E-121676No hitNo description
Gene3DG3DSA:1.10.10.602.6E-115784IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVRYISE HGHSCWSSVP KHAGLQRCGK SCRLRWAQIA  60
KHLPGRTDNE VKNFWNSCIK KKLIAQGLDP KTHNLLPASK TLLHGGGGGG AANPSGNGLA  120
QFQSNNGAAA AGTTPFTISS PAKAAAYDVA PPAIPPALYD VVLPANPAGG MLMAHDHHHH  180
HQVAAAAAPV GYPYADHGGN GGGVLMSFRD QNAGVHGAAS MDFMNGSSSS SSMEQLGGGG  240
GMSSNGNGSF SASMAAFMDE EAAMWATAVA PPGMGGLAGM DQVAQQQQQQ QVLVQDAAVG  300
VAPTTLMMHG GGAATAGAMV VDKSVEMVDV SSAVYGGATA TAFDLDLMVE SCGMFCGGGG  360
AGNAMEQLQW DC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040060.0AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042590.0AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645809.10.0myb-related protein Hv33
TrEMBLA0A0E0AK680.0A0A0E0AK68_9ORYZ; Uncharacterized protein
STRINGOGLUM07G14800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.18e-54myb domain protein 67