PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G14330.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 386aa    MW: 39823.4 Da    PI: 7.0929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G14330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.4e-08321345227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC+ +++ G C+ G+ C+++Hg+
  OGLUM07G14330.1 321 KTALCSKWRK-GRCHNGAACRYSHGE 345
                      8*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.15E-6318350IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013319345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-10319350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967320346IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-6321345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.117357386IPR000571Zinc finger, CCCH-type
SMARTSM0035618358385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MADPNGRRRL PTGDPDQANA SPSRRVSAVD GVTGGEGGPT YSHFPPGAYE PTDVAYGIRD  60
AANDERARAR ARHDQGGGAH DHHHDRPRQD QRGEAHLHDL PGEKSEVPDV GPSDQQGKEA  120
SDTDMAPLAA LAKRSYDVNF PPLHEHRAAP VPAPAPASAP APAGTMGSSS AQVQGDGAPD  180
NHDHDPRHLP RQDQRGGAHP DDLHGEKTIG SGSDILDDSK RGMINAGPQH GRITTSNGGS  240
GSGSDKGKGV SYAGDKPASS SSSSSSAGQQ GSDTDKTPSA AAASSYAVNF PPLLPAPAPV  300
PAPAPAPAVA GAMGVANAHH KTALCSKWRK GRCHNGAACR YSHGEEEQRI VPEMRVGGGG  360
RPCPELAAAK GWCRYGLNCK YCHGGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646504.10.0zinc finger CCCH domain-containing protein 47
SwissprotQ8GW050.0C3H47_ORYSJ; Zinc finger CCCH domain-containing protein 47
TrEMBLA0A0E0AK070.0A0A0E0AK07_9ORYZ; Uncharacterized protein
STRINGOGLUM07G14330.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166371112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]