PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM07G12990.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 246aa MW: 26386.3 Da PI: 10.4167 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.2 | 1.3e-13 | 154 | 178 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+s++Ca+C tV OGLUM07G12990.5 154 CSGCRNLLMYPAGATSICCAVCGTV 178 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.9E-13 | 151 | 181 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.5E-11 | 154 | 178 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MKAVAAARRG EPYIARLICR RARRQHGRST GATVDLDGSL TRQACHHTVL EPGRPSEGLV 60 LRPSSSSPSR SYKIGITPVN EKRVQPTTSP RSRTGVIVDR AILAEDKKHA PRSESPWLKK 120 PMHGVSGSTA MASTPWSSMP PSSHSLGAQS QLVCSGCRNL LMYPAGATSI CCAVCGTVTA 180 VPAPEQKSSC NVHENKERLK GNTNGFRAPQ RCARRVDGAC TQVAREVHTE VALVIFTLLC 240 VTLPDG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061509 | 0.0 | AK061509.1 Oryza sativa Japonica Group cDNA clone:006-309-F08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644598.1 | 5e-95 | protein LOL1 isoform X2 | ||||
Swissprot | Q69UP7 | 4e-96 | LOL1_ORYSJ; Protein LOL1 | ||||
TrEMBL | A0A0E0AJI7 | 1e-179 | A0A0E0AJI7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM07G12990.5 | 1e-180 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21731 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 2e-17 | lsd one like 1 |
Publications ? help Back to Top | |||
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