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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OGLUM07G08970.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | B3 | ||||||||
| Protein Properties | Length: 1250aa MW: 141272 Da PI: 5.9296 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 57.1 | 3.4e-18 | 72 | 158 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f+kv tpsdv+++grlv+p ++ae + +++e++ l++ed g+ W++ + r++s lt GW++F + n+L++gD+v F++ ++
OGLUM07G08970.1 72 FDKVVTPSDVGNLGRLVIPWQHAECYfprdvPANEREGVVLRFEDDAGKPWRFLY--RGSS----LTLGWSHFFRKNRLDAGDMVSFYRGASE 158
89*********************888***99778899******************..9999....***********************65433 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 1.6E-26 | 63 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 6.15E-21 | 69 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.92E-15 | 70 | 154 | No hit | No description |
| SMART | SM01019 | 9.7E-10 | 72 | 168 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.194 | 72 | 170 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 4.6E-15 | 72 | 159 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF52047 | 9.42E-28 | 313 | 506 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 3.9E-25 | 321 | 498 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52540 | 4.78E-26 | 500 | 691 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 6.7E-25 | 528 | 719 | IPR002182 | NB-ARC |
| SuperFamily | SSF52058 | 3.4E-31 | 754 | 962 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 1.6E-13 | 833 | 964 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 3.4E-31 | 992 | 1158 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 1.8E-10 | 1019 | 1229 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1250 aa Download sequence Send to blast |
MEPGSSSREG EQQEPANERL IATGGGGGGG SPVSDQELSD GEEVSDGEYQ AGDDFSGYAV 60 RGRGFVEKEH MFDKVVTPSD VGNLGRLVIP WQHAECYFPR DVPANEREGV VLRFEDDAGK 120 PWRFLYRGSS LTLGWSHFFR KNRLDAGDMV SFYRGASEDT RDRLFIHSKR RMHILPTLGY 180 SDPQVHINRL FQLLVRVRTM VSSFGKSGSP SPPNSPLPTV QNFTYKALKD CLQDLHYYSL 240 LSMMGRNHKT TSHCILLCHG VLGIMGFLCS DENMKEDHRM LQVPAFDDLN YSAQDKITRM 300 KEQTMPSSLA DPIYLLPTAI RNLLYLDLSN CSDIVQLPPS LGSSLHMLSA LNLSCCYSLR 360 ALSDSLVCLY DLQILLLSFC HNLQNLPVSF GDLSNLRLLD LSGCRSLRLF PSSFVNLGSL 420 ENLNLSDCIR LMGIPQNFED LQKLEYLNFA GCYRVDLPVY CLTNLVNLKC LTLSNHTDIK 480 DFPYSFTDLK RHLYLSRWWK YNRVHTQCNL KRLLEKIIEF TTCAYCYDAP SSILEETVRE 540 ELNGKRFLLV LNDADIENQC FWTDVWKVSN VGAAGSALIV TTRSKEVASL FGAMKPYYMN 600 PLSKEECFMV FQEHAGCGFD INNDHELTKV GWKIVEKCGG NLLCMKALSG LLWHSETALS 660 EIDSLVGGIV PALRLCYDLL PSHLKQCFKF CSLFPKDYVF VKHHIIQLWI SQGFVYPEED 720 SQPEDTGLQY FNEFLCRSFF QHCPFSNDHE DKFVMHELFH DLARSVSKDE SFSSEEPFFS 780 LPENICRLSL VISDSNTVVL TKEHRHLQSL MVVRRSATEY SSSFVPLLKI LGLNDLLMKC 840 GFLRALNLSC TTIVDLPGSI GRMKHLRFLA MNNTKIKSLP TEIGQLNTLQ TLELKDCCCL 900 IELPESTKNL MKMRYLDVQK EPGNIHVGMP SGLGQLTDLQ TLTVFNIGDD LSHCSIRDLK 960 NLSGLSGHVH ITGLQNITAG DDAKEANLVG KQFLQALTLE WCCSSEEMED ESDKEIANQV 1020 LQNLQPNTSI QELAIQNYPG NSFPNWIKDS GLCMLVSITI DNSQDCNEIP YLGDLPCLKF 1080 LFIQKMYAVE NFGQRSNSLT TDGKHAPGFP SLEILNLWEM YSLQFWNGTR YGDFPQLRGL 1140 SISRCPKLSN LPPLISLLYL SFHCGDQLPA LSEFPSLKSL KIEGFQKLKS VSFCPEMPML 1200 QKLEISDCKE LVSIDAPLLS VSNLKVVRCP KLHFGGSWLE DCLMWEEFKR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 1e-34 | 538 | 1060 | 253 | 771 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP005673 | 0.0 | AP005673.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1029H08. | |||
| GenBank | AP005880 | 0.0 | AP005880.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0032G22. | |||
| GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015644837.1 | 0.0 | uncharacterized protein LOC4342906 isoform X1 | ||||
| TrEMBL | A0A0E0AI15 | 0.0 | A0A0E0AI15_9ORYZ; Uncharacterized protein | ||||
| STRING | OGLUM07G08970.1 | 0.0 | (Oryza glumipatula) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP12577 | 12 | 16 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G46870.1 | 2e-29 | B3 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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