PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM07G02670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 444aa MW: 47151.2 Da PI: 9.4981 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.6 | 6.3e-40 | 58 | 197 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.........eaesssss 81 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++ ++ +as++ OGLUM07G02670.1 58 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdtasfPTHPASSAavaaaaappL------- 144 689*************************************************************77666222222222221112222....... PP TCP 82 asnsssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmri 132 + ++ +++ +s+ s++s+ s+l+l++ esr kar+rarer++ + OGLUM07G02670.1 145 ------PhaereqqQQLTKSGCSSTSETSKGSVLSLSRsESRVKARERARERSSAAAAA 197 ......0222223356777779999**************************99877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-39 | 59 | 193 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.189 | 60 | 118 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.408 | 177 | 194 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MELAGSNNKR GRVRGPNDDD DDAGEPDAKR HHHQLLLPWP QQQQQHPASR IYRVSRASGG 60 KDRHSKVYTA KGIRDRRVRL SVSTAIQFYD LQDRLGYDQP SKAIEWLIKA AAAAIDKLPS 120 LDTASFPTHP ASSAAVAAAA APPLPHAERE QQQQLTKSGC SSTSETSKGS VLSLSRSESR 180 VKARERARER SSAAAAAASK DAGDDAATPT APTAAPASSQ AASFTELLTG MAAANASPAD 240 HKQQQAWQPM TVAAATADYI GFAAAAAPHT QPRKSAAGHH SAMPHTFASP APHLANITPI 300 AMAPAQHFTL TPAAAEHHAE MTHYSFDHFM PVHAAAAAAA AASTPAGGDY NLNFSMSSGL 360 VGVHSRGTLQ SNSQSHLSSH HHHHHQQQQQ QQQLQRLSAP LDAPNIPFLF SPAAAPTAAD 420 TQFAAALQLW DGFRHADIKE KGKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-31 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-31 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003704 | 0.0 | AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10. | |||
GenBank | AP006163 | 0.0 | AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644886.1 | 0.0 | transcription factor PCF6 | ||||
TrEMBL | A0A0E0AFT8 | 0.0 | A0A0E0AFT8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM07G02670.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 3e-36 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |