PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G01370.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 405aa MW: 43454.2 Da PI: 9.8004

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G01370.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	38.8	3.4e-12	181	213	23	55
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasq 55 +vsvPs+slfk+vtvrCGhC+sll+vn+ OGLUM07G01370.2 181 IVSVPSSSLFKTVTVRCGHCSSLLTVNIGGLLL 213 69*************************987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.7E-11	181	217	IPR006780	YABBY protein
Pfam	PF01233	1.2E-14	296	353	IPR022676	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal
SuperFamily	SSF55729	7.42E-18	296	353	IPR016181	Acyl-CoA N-acyltransferase
Gene3D	G3DSA:3.40.630.30	5.6E-16	297	353	IPR016181	Acyl-CoA N-acyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0004379	Molecular Function	glycylpeptide N-tetradecanoyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MEPWRQGGAV GCGRRPAGEQ LGTGVGSTRR RRPHPQPLPF PPASATSVFA CHCRMVDPTS 60 RMRIRPARDG HIAAVVDASN GSESWAAASA EEHPSSRSDE QSEEADEDGD GNAEAVGAAV 120 LLFSPPPPAV AAATLLLFLS SDAAAAAGTR SNFFRTEDGN IGFRSKGEAE ITAAAAPPRR 180 IVSVPSSSLF KTVTVRCGHC SSLLTVNIGG LLLLPTSATA PPPPPPPPPP AATHFPHSLN 240 LAPPANPPHH HSLLDEISTA CSPTQLLLEQ HGLGGLMASA ASCRNNNVCR NNKKMIAFLR 300 WALHPPSFFR ARDSKKLVAF ISGVPARIRA RDDVVRMAVI NFPCVHKKLR SKREERREEG 360 REEGKKNMTW HHNMWDPRGF YANSTVTWDK TGVNTTLGSR VTGFV

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MEPWRQGGAV GCGRRPAGEQ LGTGVGSTRR RRPHPQPLPF PPASATSVFA CHCRMVDPTS  60
RMRIRPARDG HIAAVVDASN GSESWAAASA EEHPSSRSDE QSEEADEDGD GNAEAVGAAV  120
LLFSPPPPAV AAATLLLFLS SDAAAAAGTR SNFFRTEDGN IGFRSKGEAE ITAAAAPPRR  180
IVSVPSSSLF KTVTVRCGHC SSLLTVNIGG LLLLPTSATA PPPPPPPPPP AATHFPHSLN  240
LAPPANPPHH HSLLDEISTA CSPTQLLLEQ HGLGGLMASA ASCRNNNVCR NNKKMIAFLR  300
WALHPPSFFR ARDSKKLVAF ISGVPARIRA RDDVVRMAVI NFPCVHKKLR SKREERREEG  360
REEGKKNMTW HHNMWDPRGF YANSTVTWDK TGVNTTLGSR VTGFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005420	0.0	AP005420.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0418B08.
GenBank	AP005568	0.0	AP005568.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1299_A11.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0AFB7	0.0	A0A0E0AFB7_9ORYZ; Uncharacterized protein
STRING	OGLUM07G01370.1	0.0	(Oryza glumipatula)