PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G01370.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 414aa MW: 44426.1 Da PI: 7.8139

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G01370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	38.6	3.8e-12	191	222	24	55
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasq 55 vsvPs+slfk+vtvrCGhC+sll+vn+ OGLUM07G01370.1 191 VSVPSSSLFKTVTVRCGHCSSLLTVNIGGLLL 222 9*************************987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.3E-10	190	226	IPR006780	YABBY protein
Pfam	PF01233	1.3E-14	305	362	IPR022676	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal
SuperFamily	SSF55729	7.42E-18	305	362	IPR016181	Acyl-CoA N-acyltransferase
Gene3D	G3DSA:3.40.630.30	5.8E-16	306	362	IPR016181	Acyl-CoA N-acyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0004379	Molecular Function	glycylpeptide N-tetradecanoyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MEPWRQGGAV GCGRRPAGEQ LGTGVGSTRR RRPHPQPLPF PPASATSVFA CHCRMVDPTS 60 RMRIRPARDG HIAAVVDASN GSESWAAASA EEHPSSRSDE QSEEADEDGD GNAEAVGAAV 120 LLFSPPPPAV AAATLLLFLS SDAAAAAGTY TQNVGLLEET FGLTEDAVNE SEAEATSSEQ 180 RMETLVSEAK VSVPSSSLFK TVTVRCGHCS SLLTVNIGGL LLLPTSATAP PPPPPPPPPA 240 ATHFPHSLNL APPANPPHHH SLLDEISTAC SPTQLLLEQH GLGGLMASAA SCRNNNVCRN 300 NKKMIAFLRW ALHPPSFFRA RDSKKLVAFI SGVPARIRAR DDVVRMAVIN FPCVHKKLRS 360 KREERREEGR EEGKKNMTWH HNMWDPRGFY ANSTVTWDKT GVNTTLGSRV TGFV

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MEPWRQGGAV GCGRRPAGEQ LGTGVGSTRR RRPHPQPLPF PPASATSVFA CHCRMVDPTS  60
RMRIRPARDG HIAAVVDASN GSESWAAASA EEHPSSRSDE QSEEADEDGD GNAEAVGAAV  120
LLFSPPPPAV AAATLLLFLS SDAAAAAGTY TQNVGLLEET FGLTEDAVNE SEAEATSSEQ  180
RMETLVSEAK VSVPSSSLFK TVTVRCGHCS SLLTVNIGGL LLLPTSATAP PPPPPPPPPA  240
ATHFPHSLNL APPANPPHHH SLLDEISTAC SPTQLLLEQH GLGGLMASAA SCRNNNVCRN  300
NKKMIAFLRW ALHPPSFFRA RDSKKLVAFI SGVPARIRAR DDVVRMAVIN FPCVHKKLRS  360
KREERREEGR EEGKKNMTWH HNMWDPRGFY ANSTVTWDKT GVNTTLGSRV TGFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005420	0.0	AP005420.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0418B08.
GenBank	AP005568	0.0	AP005568.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1299_A11.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0AFB6	0.0	A0A0E0AFB6_9ORYZ; Uncharacterized protein
STRING	OGLUM07G01370.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18934	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.2	2e-08	YABBY family protein