PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G29530.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 447aa    MW: 49138.3 Da    PI: 5.0564
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G29530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-1661105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
  OGLUM06G29530.1  61 REKWTEEEHDKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 105
                      789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1655109IPR009057Homeodomain-like
PROSITE profilePS5129421.58556110IPR017930Myb domain
TIGRFAMsTIGR015574.2E-1659108IPR006447Myb domain, plants
SMARTSM007172.9E-1460108IPR001005SANT/Myb domain
PfamPF002491.7E-1461104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-1061101IPR009057Homeodomain-like
CDDcd001673.39E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPQLEEKDSS DLAINKGPSL DLVKSPLMMN DASATVTAMQ PEGMEEFPVK VRKPYTITKQ  60
REKWTEEEHD KFLEALKLYG RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGSNNAIE  120
IPPPRPKRKP LHPYPRKCAN SGSDANPATA QLKLAPGSSS SGSDQENGSP ISVLSAMQSD  180
AFGSSVSNPS TRCTSPASSD DGNNIPTFTS GEDNNVPCEP TVIYPSQSHK EIDQDRKDVN  240
NMSEEDSSEE EVQETSLKLF GRTVVIPDPR KRSSSDPKHE SEEQISQPSY EEMLQASSSV  300
GEIPAAYCAP NGWFMSYNSF PFQFGESAAD ARIPPLHVWW PYYGFAPISH PRGLSTVMQQ  360
TEGSDESDGG KSHSSESSSD SGENVQMTAP QSSRIVESLG AIYVRDSGSS FELKPSANSA  420
FVRVKPSNSG DEEVIRGFVP YKRCKFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8295230.0CT829523.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644385.10.0protein REVEILLE 1 isoform X1
TrEMBLA0A0E0AEP60.0A0A0E0AEP6_9ORYZ; Uncharacterized protein
STRINGOGLUM06G29530.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.15e-38MYB_related family protein