PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G29360.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 292aa    MW: 32973.4 Da    PI: 8.208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G29360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.71.2e-45201512128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk....rknratksgyWkatgkdke 91 
                       pGfrFhPt+eel+ +yLk+ v+gkkl++ ++i++v++y+++P++Lp  ++ +e+ewyfF++rd+k+atg     r++r+t++g+Wkatg+d++
  OGLUM06G29360.1  20 LPGFRFHPTEEELLEFYLKQVVQGKKLKF-DIIPTVHLYRHDPRELPGLARIGEREWYFFVPRDRKQATGGggggRPSRTTERGFWKATGSDRA 112
                      59**************************9.99***************8778899**************7555556******************* PP

              NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v ++   ++l+glkktLv+y+grap+g+ktdWvm+eyrl
  OGLUM06G29360.1 113 VRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 151
                      **98777788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-5317178IPR003441NAC domain
PROSITE profilePS5100552.25719178IPR003441NAC domain
PfamPF023652.0E-2421151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEQQRSRSTA AGGEVEVEQL PGFRFHPTEE ELLEFYLKQV VQGKKLKFDI IPTVHLYRHD  60
PRELPGLARI GEREWYFFVP RDRKQATGGG GGGRPSRTTE RGFWKATGSD RAVRCAADPK  120
RLIGLKKTLV YYEGRAPRGT KTDWVMNEYR LPDPAAIPDT MQLQMQHDDM VLCKVYRKAV  180
SLKELEQRVA MEELARSTTS SGTHNTGSPL QQDSSSISIS SSSDAMKKEV VGVDEASAAA  240
HELVRPATLS LPQLEVARPQ SGLEWMQEPF LTQLRSPWME TWSPYYASVL NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-45131789168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankCU4067030.0CU406703.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C111K18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643570.10.0NAC domain-containing protein 22-like
SwissprotQ10S651e-101NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0E0AEL70.0A0A0E0AEL7_9ORYZ; Uncharacterized protein
STRINGOGLUM06G29360.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-78NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]