PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G25360.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23545.4 Da    PI: 4.785
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G25360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.15.2e-09929121
                     S---SHHHHHHHHHHHHHHHH CS
           SRF-TF  1 krienksnrqvtfskRrngil 21
                     krie+ ++rqvtfskRr+g++
  OGLUM06G25360.1  9 KRIEDATRRQVTFSKRRAGLM 29
                     79******************9 PP
2K-box60.38e-2146137999
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       ++++ e++  e+++L++ei++L+ ++R+  GedL+s s + eL qL+ qLe+sl+++ ++K+el+ +q+e+++ + + ++e+n+ L +++ 
  OGLUM06G25360.1  46 ETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVStVDELSQLQLQLESSLSNVHARKDELMSQQLEDMRCMHQTVHEQNNFLCRMMS 137
                      4556678999***************************984689*******************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-6150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.512130IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-10130IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-10323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-71029IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-102338IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2048136IPR002487Transcription factor, K-box
PROSITE profilePS5129713.68951142IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRGKIEMKR IEDATRRQVT FSKRRAGLME LFHRYEITTR NTRLQETNRD DEQMVMEITR  60
LRNEIDQLEA SLRRQTGEDL SSVSTVDELS QLQLQLESSL SNVHARKDEL MSQQLEDMRC  120
MHQTVHEQNN FLCRMMSENW QSPGSGEASA MEALTMLPPA AAATTAAEAF NCFFPEEEKG  180
VAASSTLLQL WPQPHDGDQP DLRLW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1740931e-177AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882177.14e-81MADS-box transcription factor 30 isoform X7
SwissprotQ655V41e-82MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A0E0AD001e-150A0A0E0AD00_9ORYZ; Uncharacterized protein
STRINGOGLUM06G25360.11e-151(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.26e-16MIKC_MADS family protein