PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G25170.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 337aa MW: 36652.4 Da PI: 8.2816

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G25170.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.8e-33	55	109	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl OGLUM06G25170.1 55 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 109 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.876	52	112	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-32	52	110	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.77E-16	54	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-24	55	110	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-7	57	107	IPR001005	SANT/Myb domain
Pfam	PF14379	2.4E-24	147	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MFPSSSPSPS SSSKKQQQLS GGVGVGGAAA AASSNDRPPL CVQGDSGLVL TTDPKPRLRW 60 TVELHDRFVD AVTQLGGPDK ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQHKDFNDHS 120 VKDAMDMQRN AASSSGIMGR SMNDRSVHVN EALRMKMEVQ RRFHEQLEVQ KHLQMRVEAQ 180 GKYMQTILEK AYQAISSSGD CATWHAGYKS LGSQAVLDIG SSMSFPSLQD DLQLYGGSHL 240 DHLHQQHEQM EIRPSIDTFL AFNYSSSTGK SPMVWPGADD GGGEPAKISG DHQLQMAAPA 300 TTTMMMEAIT MSGGDSMGSK GFEGQMSSKL DMRSPPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119588	0.0	AK119588.1 Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642102.1	0.0	myb family transcription factor APL isoform X1
Swissprot	Q9SAK5	4e-84	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A0E0ACY1	0.0	A0A0E0ACY1_9ORYZ; Uncharacterized protein
STRING	OGLUM06G25170.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-83	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]