PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G25070.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 342aa    MW: 37175.1 Da    PI: 7.7296
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G25070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.31.6e-3665142178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +CqvegC  +l   key+r+h+vCe h+k+  v+v+g+ +rfCqqCsrfh+ sefD+ekrsCrrrL++hn+rrrk+q+
  OGLUM06G25070.1  65 RCQVEGCGLELGGYKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSRFHAPSEFDQEKRSCRRRLSDHNARRRKPQT 142
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-2960127IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.87263140IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-3664146IPR004333Transcription factor, SBP-box
PfamPF031101.1E-2866139IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MECNPVSSST SSSLLWDWDA TASAEAPPPP GKRGGRDSSS ASASAKRGRS AAAGDAAAAA  60
AEAPRCQVEG CGLELGGYKE YYRKHRVCEP HTKCLRVVVA GQDRRFCQQC SRFHAPSEFD  120
QEKRSCRRRL SDHNARRRKP QTDVFAFGSG TLPRSLFDDR QQISFAWDNN APLNHANTTS  180
SSSWTSDLQL SQVMDISKRS RKAGADSANI RLSNALPTLC NDTNELLPIK GADASETASK  240
LDGALDVQRA LSLLSASSRG LTDPGHQTSS IIQFTNSNQN STLPSVPNEG NSNVPFWVDG  300
QHQAVEPQVF QFTMDTGNTV LPDLERIKPS YESSMFGLNQ IH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-22661391184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047440.0AP004744.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641499.10.0squamosa promoter-binding-like protein 11
SwissprotQ653Z50.0SPL11_ORYSJ; Squamosa promoter-binding-like protein 11
TrEMBLA0A0E0ACW40.0A0A0E0ACW4_9ORYZ; Uncharacterized protein
STRINGOGLUM06G25070.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62712952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.42e-40squamosa promoter binding protein-like 10