PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G24120.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 393aa    MW: 42325.8 Da    PI: 9.9266
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G24120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.8e-30247306159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ k++++pr+Y+rC++a  Cpvkkkv+rsa+d++v++ tYegeHnh 
  OGLUM06G24120.1 247 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSADDNTVLVATYEGEHNHA 306
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.199242308IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-29246308IPR003657WRKY domain
SuperFamilySSF1182901.28E-25246308IPR003657WRKY domain
SMARTSM007743.2E-35247307IPR003657WRKY domain
PfamPF031065.4E-25248305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAKMLPPPSQ SVSSRPPSWL YIPPRRRHGT FTSSCAFRLS PSSPSSPPPP VLDFQYIQFM  60
DSWIEQTSLS LDLNVGLPST ARRSSAPAAP IKVLVEENFL SVKKDHEVEA LEAELRRASE  120
ENKKLTEMLR AVVAKYTELQ GQVNDMMSAA AVNAGNHQSS TSEGGSVSPS RKRIRSVDSL  180
DDAAHHRKPS PPFVAAAAAA AYASPDQMEC TSAAAAAAAK RVVREDGKPK VSKRFVHADP  240
SDLSLVVKDG YQWRKYGQKV TKDNPCPRAY FRCSFAPACP VKKKVQRSAD DNTVLVATYE  300
GEHNHAQPPH HDAGSKTAAA AKHSQHQPPP SAAAAVVRQQ QEQAAAAGPS TEVAARKNLA  360
EQMAATLTRD PGFKAALVTA LSGRILELSP TKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-212463091375WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1062820.0AK106282.1 Oryza sativa Japonica Group cDNA clone:002-101-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641578.10.0WRKY transcription factor WRKY28-like
SwissprotQ0DAJ30.0WRK28_ORYSJ; WRKY transcription factor WRKY28
TrEMBLA0A0E0ACL00.0A0A0E0ACL0_9ORYZ; Uncharacterized protein
STRINGOGLUM06G24120.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.13e-45WRKY DNA-binding protein 60
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Berri S, et al.
    Characterization of WRKY co-regulatory networks in rice and Arabidopsis.
    BMC Plant Biol., 2009. 9: p. 120
    [PMID:19772648]
  5. Delteil A, et al.
    Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence.
    Mol. Plant Pathol., 2012. 13(1): p. 72-82
    [PMID:21726398]
  6. Peng Y,Bartley LE,Canlas P,Ronald PC
    OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity.
    Rice (N Y), 2010. 3(1): p. 36-42
    [PMID:21961049]
  7. Chujo T, et al.
    OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus.
    Plant Mol. Biol., 2013. 82(1-2): p. 23-37
    [PMID:23462973]
  8. Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H
    Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly.
    PLoS ONE, 2013. 8(4): p. e62460
    [PMID:23638091]