PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G23980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 283aa MW: 30632.3 Da PI: 6.8645 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 1e-07 | 226 | 259 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + OGLUM06G23980.1 226 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 259 569*****************************87 PP | |||||||
2 | ELK | 29.5 | 1.6e-10 | 180 | 201 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ OGLUM06G23980.1 180 ELKHELKQGYREKLVDIREEIL 201 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-19 | 45 | 89 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.3E-16 | 48 | 85 | IPR005540 | KNOX1 |
SMART | SM01188 | 0.0014 | 180 | 201 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.196 | 180 | 200 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.5E-6 | 180 | 201 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.596 | 200 | 263 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-15 | 202 | 267 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-10 | 202 | 267 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.01E-11 | 203 | 264 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 207 | 264 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-18 | 220 | 259 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MAFHYQDHAL AMDAAAAAAE TGGHHHPGFV GAGGVVGGGG GGGWEREKAA IAAHPLYERL 60 LEAHVACLRV ATPVDQLPRI DAQIAARPPP LAAASAAAAA DPLCIAPLFV QGTTTATFVT 120 LTAGASPGEG SGATMSDDED NQVDSESNMF DGNDGSDGMG FGPLMLTEGE RSLVERVRQE 180 LKHELKQGYR EKLVDIREEI LRKRRAGKLP GDTASTLKAW WQAHSKWPYP TEEDKARLVQ 240 ETGLQLKQIN NWFINQRKRN WHSNPASSSS DKSKRKRYRV VDF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 276 | RKRNWHSNPASSSSDKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007628 | 0.0 | AB007628.2 Oryza sativa Japonica Group HOS59 mRNA, complete cds. | |||
GenBank | AB061818 | 0.0 | AB061818.1 Oryza sativa Japonica Group HOS59 mRNA for KNOX family class 2 homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644389.1 | 1e-135 | homeobox protein knotted-1-like 11 isoform X1 | ||||
Refseq | XP_015644390.1 | 1e-135 | homeobox protein knotted-1-like 11 isoform X2 | ||||
Swissprot | Q94LW4 | 1e-136 | KNOSB_ORYSJ; Homeobox protein knotted-1-like 11 | ||||
TrEMBL | A0A0E0ACJ2 | 0.0 | A0A0E0ACJ2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G23980.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 2e-84 | KNOTTED1-like homeobox gene 3 |