PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G23380.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 436aa    MW: 47335.7 Da    PI: 8.0761
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G23380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-1889138155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  OGLUM06G23380.1  89 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 138
                      78*******************......55************************997 PP
2AP240.56.7e-13181229153
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      s+++GV+ +k  g+W+A+I         +k+++lg ++t+ eAaka+++a+ k 
  OGLUM06G23380.1 181 SRFRGVTLHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAKAYDKAAIKC 229
                      789*******.7******77733....25**********77*********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-1089138IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1589147IPR016177DNA-binding domain
SMARTSM003801.7E-3190152IPR001471AP2/ERF domain
PROSITE profilePS5103217.68890146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1790146IPR001471AP2/ERF domain
PfamPF008479.3E-9181231IPR001471AP2/ERF domain
CDDcd000185.11E-23181241No hitNo description
SuperFamilySSF541716.15E-17181240IPR016177DNA-binding domain
SMARTSM003802.1E-32182245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-17182240IPR001471AP2/ERF domain
PROSITE profilePS5103214.789182239IPR001471AP2/ERF domain
PRINTSPR003672.0E-5183194IPR001471AP2/ERF domain
PRINTSPR003672.0E-5221241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAATFYGVGS IALAMHEDDE EEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAAAVVPEST  60
EQRHVAAAAE QWARPPSRKT RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  120
TAQAAARAYD QAAIKFRGVE ADINFTLDDY KEDIKKMNNF SKEEFVQVLR RQGAGFVRGS  180
SRFRGVTLHK CGKWEARIGQ LMGKKYVYLG LYDTEMEAAK AYDKAAIKCC GKEAVTNFDT  240
QAYEDELNLQ SWDSELDLEL SLGCSGGERA AGEVLHSAPS NQRTSLTFML PEEEEMTACH  300
RQRSIWARPS LAPAMPDGGA VIRPDQHQHH PSSRNMLLMS QVISSSGGGG SGRQGAAELH  360
MRPRHGWSSG GNNWAPPYAA RPRLPGAEDD DDSAAAASSG FPMGQVATAS SSSRPSSSSC  420
SSRRSSTAAA TATTGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429570.0AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.10.0ethylene-responsive transcription factor RAP2-7
SwissprotB8B0I80.0AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A0E0ACB20.0A0A0E0ACB2_9ORYZ; Uncharacterized protein
STRINGOGLUM06G23380.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-87AP2 family protein