PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G23280.6

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 2049aa MW: 224851 Da PI: 7.3714

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G23280.6	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17	1e-05	1920	1941	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tG+C+ G+rCk +H++ OGLUM06G23280.6 1920 CPVFEATGECPQGSRCKLHHPK 1941 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.9	1832	1860	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.037	1832	1861	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0094	1865	1890	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.235	1865	1891	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.7E-5	1892	1918	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.76	1892	1919	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1	1919	1941	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.437	1920	1942	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2049 aa Download sequence Send to blast
MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGGG GGYEPHSHHQ 60 YHLPDHHHHH HHHPPPRVQH HHHHHHQQLP APTPPPPPPP PLPQHRLEPP PPHYGFPPRG 120 HPDAYSPPPY HDPSPHHHYH RHGGDDFLPA DEIRRVGGGH HHHHHHPHLQ QLLPWEEAEE 180 ERRRYGGATQ QLRLSPSGPR KRQRCAVHDA DVESTSSSGP PPRRQRQQPH PDYALDDSFV 240 DRNNAHPGYM VHEGFSIHSD SKVSRKIQMP TQMALPGSPH GTSAGYARRA PQKVAPSRVS 300 VWHRIEENPA MYEPSSPLPH MPKEVHVSPC KSNNVAPASK ELASVISVDC RGKSADGNDG 360 DSNTGTKKNP VKKNEKVLAS VLVKPPMEPK EKEVAAKKML KKPDKVQKNA VHSNIRSLVS 420 TPCPGAGAKK VKKIVIKKIV RKINGKGNQN STPVVSEKRD GIDANACEKE EGEITTSSFE 480 KDVISAHDPI AVSDTAGFGN AVNDQKQKNT NFTNPSGRNA ASANGSMEIP DPPNGSGSAH 540 PGKEEVLSPK NPVDNSNASL VVEPIEVLEK SGTEHPRKEH DMSSIGSGVN DAFADANNHT 600 QKEVGEMNVT VAINSVRVSD AREVPRCDDS SMEESKVPKD VDANNAVCMD GVASNCDTTE 660 VCGNEDARRE CGKKLIGIND EKAFLLNNSA RSSSTSDTCM TAVEGAQKKE GIILTGSSEK 720 SIGFLGDSVG THRTTEFGAS KDAPNEGDDM PSHPSEKDFM SLNSCGGLNY TEVSEKEDIQ 780 EKEDRVPMES IVACTSSGNE DIQVNEGRKP MELSEANAFS GSGDSQGKEC RIPMGSSETN 840 TSSVNHVNAS NEKDFSLSED TQKKESHRPI ESCENTTFEI MHHEEAPSTE EVITGVSLGR 900 KVAEGPTRSN ERCSGARGNS ATTLKFGLAC ATKDNQMEDL LNNRTALNET DDPLDAEDSP 960 VFVPPSSRNV ESTYASPLYD PMEDSTSDGI LNIGLGRNTT SKAAELLDLH RDHISSENDS 1020 LIHSRGTSSV SGNREQSVPT ALTLGSNIYF SSAETDDRPE ERHELVVEGQ QGLTVETTSK 1080 LDSPGKIEVL NGAGFISTGI QNWLSLPPSI NSMEMSGQFL NNGFTVSKGR LGLDQSMDDA 1140 TSMSQDHDIA QDMDQRGSED AFFSQDHSIR LCGSDLPHSH LLAPKESSMN GEDQSGIVLT 1200 GLHPSSSVNV LGHYGYQTDD IPVDNLNKLP SALESSDAMD ADQVSSQVCV NPDHTNDSNT 1260 ENAGVESNAK QDLLSSWIEA IVSEAKKEHP PCKSTPLTVG LPDKLLEPKD SDRKTLLETV 1320 VPSAVKSPQI NFASSTLQKV APKQVTLPSS SREPTRANQN ARHRTWHRGN IASSSSSLHA 1380 SQPLGLPPKL PPKKNDKAQN SYIRKGNALI RNPSNGNHPH SSTGHDTQNK LNKPVVRRSM 1440 NFVRTADTKD LANSNISVER PKTPPLPLHT KSSCPTTLLE PLSQTLQKQH GHEAEKEDLT 1500 GQPKSGVDNS SIKSAQKSEP SDPSKVVYVR PKSNQLVAAQ RQHPIDLVNS PTDKILSLQA 1560 PIASDLYLKK RKNQIVLSSC SPSDGLSTKE TLPAENSNSE EKKDLMIACS ISGIPGVKDR 1620 PQKALQTTNN VGRFSHVWTL NGQQPQRKGF MGSSHMNAFP RILPWKRKIF CKNFRSSHMS 1680 NVSSIRIVRK LLQTRKRDMI YTVSTDGFSL RKSGVLSVGG SSLKWSRSLE KRSQKVNKEA 1740 TLALAEVERR KREKRKRQSL HDKGDHQFES VTGNQLRNSR QSSSDLRKPS TCNEYVRVSK 1800 GNQLVRNPKN VIRMLASDKV RWSLHTVRSR LAKKQQYCQF FTRFGECKKP RGKCPYIHDR 1860 AKVLPERMPD CSYFLRGLCT NIACPYRHVK VNLNAPVCED FLKGYCAYGD ECHKKHSYVC 1920 PVFEATGECP QGSRCKLHHP KSKVKSKSRR PDFLQNSSWG RYFDASIDHQ DETRKVSLDE 1980 DEREKPQRVF SDGDLGFISL DDDADEDVTA LDASDDIPLM ELDSGDLSAQ TDNLDALIKP 2040 LRIMRTARV

Sequence ? help Back to Top

Protein Sequence Length: 2049 aa Download sequence Send to blast

MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGGG GGYEPHSHHQ  60
YHLPDHHHHH HHHPPPRVQH HHHHHHQQLP APTPPPPPPP PLPQHRLEPP PPHYGFPPRG  120
HPDAYSPPPY HDPSPHHHYH RHGGDDFLPA DEIRRVGGGH HHHHHHPHLQ QLLPWEEAEE  180
ERRRYGGATQ QLRLSPSGPR KRQRCAVHDA DVESTSSSGP PPRRQRQQPH PDYALDDSFV  240
DRNNAHPGYM VHEGFSIHSD SKVSRKIQMP TQMALPGSPH GTSAGYARRA PQKVAPSRVS  300
VWHRIEENPA MYEPSSPLPH MPKEVHVSPC KSNNVAPASK ELASVISVDC RGKSADGNDG  360
DSNTGTKKNP VKKNEKVLAS VLVKPPMEPK EKEVAAKKML KKPDKVQKNA VHSNIRSLVS  420
TPCPGAGAKK VKKIVIKKIV RKINGKGNQN STPVVSEKRD GIDANACEKE EGEITTSSFE  480
KDVISAHDPI AVSDTAGFGN AVNDQKQKNT NFTNPSGRNA ASANGSMEIP DPPNGSGSAH  540
PGKEEVLSPK NPVDNSNASL VVEPIEVLEK SGTEHPRKEH DMSSIGSGVN DAFADANNHT  600
QKEVGEMNVT VAINSVRVSD AREVPRCDDS SMEESKVPKD VDANNAVCMD GVASNCDTTE  660
VCGNEDARRE CGKKLIGIND EKAFLLNNSA RSSSTSDTCM TAVEGAQKKE GIILTGSSEK  720
SIGFLGDSVG THRTTEFGAS KDAPNEGDDM PSHPSEKDFM SLNSCGGLNY TEVSEKEDIQ  780
EKEDRVPMES IVACTSSGNE DIQVNEGRKP MELSEANAFS GSGDSQGKEC RIPMGSSETN  840
TSSVNHVNAS NEKDFSLSED TQKKESHRPI ESCENTTFEI MHHEEAPSTE EVITGVSLGR  900
KVAEGPTRSN ERCSGARGNS ATTLKFGLAC ATKDNQMEDL LNNRTALNET DDPLDAEDSP  960
VFVPPSSRNV ESTYASPLYD PMEDSTSDGI LNIGLGRNTT SKAAELLDLH RDHISSENDS  1020
LIHSRGTSSV SGNREQSVPT ALTLGSNIYF SSAETDDRPE ERHELVVEGQ QGLTVETTSK  1080
LDSPGKIEVL NGAGFISTGI QNWLSLPPSI NSMEMSGQFL NNGFTVSKGR LGLDQSMDDA  1140
TSMSQDHDIA QDMDQRGSED AFFSQDHSIR LCGSDLPHSH LLAPKESSMN GEDQSGIVLT  1200
GLHPSSSVNV LGHYGYQTDD IPVDNLNKLP SALESSDAMD ADQVSSQVCV NPDHTNDSNT  1260
ENAGVESNAK QDLLSSWIEA IVSEAKKEHP PCKSTPLTVG LPDKLLEPKD SDRKTLLETV  1320
VPSAVKSPQI NFASSTLQKV APKQVTLPSS SREPTRANQN ARHRTWHRGN IASSSSSLHA  1380
SQPLGLPPKL PPKKNDKAQN SYIRKGNALI RNPSNGNHPH SSTGHDTQNK LNKPVVRRSM  1440
NFVRTADTKD LANSNISVER PKTPPLPLHT KSSCPTTLLE PLSQTLQKQH GHEAEKEDLT  1500
GQPKSGVDNS SIKSAQKSEP SDPSKVVYVR PKSNQLVAAQ RQHPIDLVNS PTDKILSLQA  1560
PIASDLYLKK RKNQIVLSSC SPSDGLSTKE TLPAENSNSE EKKDLMIACS ISGIPGVKDR  1620
PQKALQTTNN VGRFSHVWTL NGQQPQRKGF MGSSHMNAFP RILPWKRKIF CKNFRSSHMS  1680
NVSSIRIVRK LLQTRKRDMI YTVSTDGFSL RKSGVLSVGG SSLKWSRSLE KRSQKVNKEA  1740
TLALAEVERR KREKRKRQSL HDKGDHQFES VTGNQLRNSR QSSSDLRKPS TCNEYVRVSK  1800
GNQLVRNPKN VIRMLASDKV RWSLHTVRSR LAKKQQYCQF FTRFGECKKP RGKCPYIHDR  1860
AKVLPERMPD CSYFLRGLCT NIACPYRHVK VNLNAPVCED FLKGYCAYGD ECHKKHSYVC  1920
PVFEATGECP QGSRCKLHHP KSKVKSKSRR PDFLQNSSWG RYFDASIDHQ DETRKVSLDE  1980
DEREKPQRVF SDGDLGFISL DDDADEDVTA LDASDDIPLM ELDSGDLSAQ TDNLDALIKP  2040
LRIMRTARV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1748	1753	RRKREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003573	0.0	AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643043.1	0.0	uncharacterized protein LOC4341610 isoform X2
TrEMBL	A0A0E0ACA0	0.0	A0A0E0ACA0_9ORYZ; Uncharacterized protein
STRING	OGLUM06G23280.5	0.0	(Oryza glumipatula)