PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G23260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 33276.2 Da PI: 8.0957 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.2 | 1e-19 | 15 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEde l ++v+++G ++W++I r+++ gR++k+c++rw + OGLUM06G23260.1 15 RGPWSPEEDEALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 60 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eEd +++a+++lG++ W++Iar ++ gRt++ +k++w+ OGLUM06G23260.1 67 RRPFTAEEDATILRAHARLGNR-WAAIARLLQ-GRTDNAVKNHWN 109 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.746 | 10 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-31 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-17 | 14 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-19 | 15 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-26 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.05E-16 | 17 | 59 | No hit | No description |
SMART | SM00717 | 6.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.563 | 67 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-14 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.02E-11 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGGGGGVEAD CDRIRGPWSP EEDEALRRLV ERHGARNWTA IGREIPGRSG KSCRLRWCNQ 60 LSPQVERRPF TAEEDATILR AHARLGNRWA AIARLLQGRT DNAVKNHWNC SLKRKLAVAT 120 TTTTTTGAAA APGVVADAAE LVERPCKRFS PTPDSPSGSG SGSDRSDLSH GGGFGQIFRP 180 VARTGAFEPV DCAISRRQEE DPFTSLSLSL PGTDQRFNHD SAHSHFQELP SSPSPPPPPP 240 PAAAASTTQY PFTPEFAAAM QEMIRAEVHK YMASVGVRAG CGDAGGADLH MPQLVEGVMR 300 AAAERVGRMH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-38 | 12 | 116 | 4 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105817 | 0.0 | AK105817.1 Oryza sativa Japonica Group cDNA clone:001-203-C12, full insert sequence. | |||
GenBank | AK121564 | 0.0 | AK121564.1 Oryza sativa Japonica Group cDNA clone:J033034J16, full insert sequence. | |||
GenBank | AP003573 | 0.0 | AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | CT833918 | 0.0 | CT833918.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN042F17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641187.1 | 0.0 | transcription factor MYB77 | ||||
TrEMBL | A0A0E0AC93 | 0.0 | A0A0E0AC93_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G23260.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 5e-60 | myb domain protein 77 |